RNA id: TU2126883


Basic Information

Item Value
RNA id TU2126883
length 1763
RNA type TUCP
GC content 0.49
exon number 1
gene id G1858575
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 34839900 ~ 34841662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGCAGAGATGTGCCCTCCTCCAGGGGTCTCGAGCCCAGGCTAGGGTGTCCAGGGGGGCTAGGGGCCCCATAGCCTTGCTCTGACTCTGTGTCAAAGGAGTAGGACGATTGGGTGCTCTCTGAGCTGCAGGAGAACTTGGAGGTAGAACTCTCCTGGTTAGGGATGGAGGAGGTCTTTGGCACTGAACCCAGATCAGATACAGAGACCGATGCAATGTCTGTGTTTGGTTCAGATCCAGTGTTTGTGTATGGGAATGATGGTGGTGGCTCGTCTTGGTTGTTCTTGTTGTGAGTCTTTGGTACAGAACCTAGGtcagatacagagacacacacggtGTCTTTGTCTGGTGCAGATCCAGTGGTGAAGAGGTCTATCTTTGTGTATgggagtgatgatgatgatggtggctCTTCTGGGTAGTTGTTGTGGTTCTTTGGCACTGGACTTAGGTCTGATACAGACACAGTGATGTTAACGTCGGTGTTTGATTGAGACAGAGTGGTGGGGACCTCCGCGTTTATGTCCAGGTGTGACGAAGATGATGCAGATGATGAAGATGACATATATTTTGTGTTACTGTGATTGGATGACTCTTTGGTCTCTTTGTCCACTGGTCTGAGAAGTTGTCTAGCCTCCAGAGAGATAGGGATCTCTAGGCTCTGACTGGGTGCTGGTTTCGCTGGGGTTACACACAGGGGCTTGTGGGGTTCACTAAGGAAGGCAACTGAGAAACTTAGTGATACTGGATGCATTGGGCTCGCCTGTGATGTCTCATGGCAAGTAGTTGGGCCTTTTAAAGGTTTATGGATTTCAACAGTTTGGGTAGGTTGGATTGGTTTAACACCTTTTTTCAGAACCTTCATACCATGTGACACTGTGGGGTGAGGCGGAGAGGGCAGATGAAGGAGAGGGGGTGATGCCAGATCTGAGGTAGCTGGTTCAGAGACAGGTGAGGCATGGACAGGTGATTGCATCATCAATGCGTCATCCTGTGGAATAGGCTTTTGGGGCTGAGCGACAGACATAATGGTGCTTGTGTCTGAAGGTCTGCTGataacctctccctccttctgtctctcgtttttctcttttctttcctccGTCTCATTTACCTTgactctctccactctctgctTACCGTCTGCTTCCTTCttttcttcatctctctcatATTCCTGCTTCACCgtttcctctccttccttctccaaactctcccctcctctctgctctcctgcatgggtatttctctctctttgctccATCTCAATCTGCTCAGCTCCGAGGTTAATATTGGCGTTGTCTTCACATTTAGGGCCAACTGACTCTTCCTGCCGGTGTTCACTGGTAGAGTCACCAAGCTCATGGTTCAGGTTGAAAGAATTgctctcattaatattgttgatTAGCTTTTCCTGTTGTTGGTCAACACTGGTGTGCTCATCGAGCTCATAGTGGTTGCCCTCACCACTATGGCTGACAGGCTTATCGTATGAGTCAGTCCCAACCGTTTCACCATTATGGGCAACTAACTCTTCCTGTTTGTCATCACTAGCCAAATCATCAGTCCTCAGACTACGAGGTTTTCCCTCACTAGCATGGCCGACTCCCAGCTCCTGCTGGTCAACACAGGTAGTTTCATCAAGTTCAGTCCTCAGGTTAGGAGGTTTGCCCTTACCAACATGGCCAACTACATTATTCCCTTGGTTAATCTCACTTGGGTCTATACTAACAGTGTCAGACTCCTCAGATCCTTGCTCAATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2126827 lncRNA downstream 24513 34814812 ~ 34815387 (-) True G1858520
TU2126877 lncRNA downstream 28309 34811316 ~ 34811591 (-) True G1858569
TU2126760 lncRNA downstream 189787 34649659 ~ 34650113 (-) True G1858456
TU2126759 lncRNA downstream 190552 34648788 ~ 34649348 (-) True G1858455
TU2126534 lncRNA downstream 571712 34267374 ~ 34268188 (-) True G1858244
TU2126885 lncRNA upstream 2283 34843945 ~ 34844171 (-) True G1858577
TU2126889 lncRNA upstream 10212 34851874 ~ 34852131 (-) True G1858581
TU2126891 lncRNA upstream 12503 34854165 ~ 34854400 (-) True G1858583
TU2126895 lncRNA upstream 16513 34858175 ~ 34858382 (-) True G1858587
TU2126896 lncRNA upstream 17251 34858913 ~ 34859140 (-) True G1858588
XM_021580850.2 mRNA downstream 2259 34823020 ~ 34837641 (-) True slc25a16
XM_021580849.2 mRNA downstream 2265 34823020 ~ 34837635 (-) False slc25a16
XM_036960311.1 mRNA downstream 29782 34794341 ~ 34810118 (-) True LOC110502637
XM_036960308.1 mRNA downstream 266839 34548636 ~ 34573061 (-) True anxa11a
XM_021580821.2 mRNA downstream 304252 34479118 ~ 34535648 (-) False dlg5a
XM_021580853.2 mRNA upstream 73840 34915502 ~ 34928362 (-) False LOC110502644
XM_036960316.1 mRNA upstream 73840 34915502 ~ 34929983 (-) False LOC110502644
XR_002470356.2 mRNA upstream 73840 34915502 ~ 34929983 (-) False LOC110502644
XM_036960317.1 mRNA upstream 73840 34915502 ~ 34936389 (-) True LOC110502644
XM_021580856.2 mRNA upstream 211234 35052896 ~ 35059019 (-) True LOC110502648
TU2126826 other downstream 18335 34820776 ~ 34821565 (-) True G1858519
TU2126422 other downstream 652030 34177057 ~ 34187870 (-) False kcnma1a
TU2125229 other downstream 1238059 33596158 ~ 33601841 (-) True LOC110502621
TU2124285 other downstream 2193760 32637425 ~ 32646140 (-) False G1856217
TU2124286 other downstream 2193760 32637425 ~ 32646140 (-) True G1856217
TU2126950 other upstream 95027 34936689 ~ 34968861 (-) True G1858636
TU2127381 other upstream 401452 35243114 ~ 35243589 (-) True G1859038
TU2128534 other upstream 1112558 35954220 ~ 35959205 (-) False LOC110502661
TU2128895 other upstream 1607169 36448831 ~ 36451459 (-) True G1860462
TU2129907 other upstream 2493365 37335027 ~ 37335414 (-) True G1861368

Expression Profile