RNA id: TU2126896


Basic Information

Item Value
RNA id TU2126896
length 228
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1858588
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 34858913 ~ 34859140 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTAAACTGTAATGTGTCTTGATGACATCTGGAAACCAATTCCACAGGACAGATCGGATTTATGGCAAAACGTTGTTACTGCCAAAAGCTGACAATTGCAGTGCACTGCCAATAGACCGCCATTACTGCCAATAGTAATGTCAATGTAATATACTGTTAATGTCTCTCATTTGCTAGGTATAACACAAGGTAGATGCCAAGAACCATTCATTTCCTACTTCCTAGCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2126895 lncRNA downstream 531 34858175 ~ 34858382 (-) True G1858587
TU2126891 lncRNA downstream 4513 34854165 ~ 34854400 (-) True G1858583
TU2126889 lncRNA downstream 6782 34851874 ~ 34852131 (-) True G1858581
TU2126885 lncRNA downstream 14742 34843945 ~ 34844171 (-) True G1858577
TU2126827 lncRNA downstream 43526 34814812 ~ 34815387 (-) True G1858520
TU2126900 lncRNA upstream 2520 34861660 ~ 34862417 (-) True G1858592
TU2126903 lncRNA upstream 8423 34867563 ~ 34867784 (-) True G1858595
TU2126907 lncRNA upstream 13566 34872706 ~ 34873135 (-) True G1858599
TU2126908 lncRNA upstream 16478 34875618 ~ 34876183 (-) True G1858600
TU2126909 lncRNA upstream 18479 34877619 ~ 34878058 (-) True G1858601
XM_021580850.2 mRNA downstream 21272 34823020 ~ 34837641 (-) True slc25a16
XM_021580849.2 mRNA downstream 21278 34823020 ~ 34837635 (-) False slc25a16
XM_036960311.1 mRNA downstream 48795 34794341 ~ 34810118 (-) True LOC110502637
XM_036960308.1 mRNA downstream 285852 34548636 ~ 34573061 (-) True anxa11a
XR_005039173.1 mRNA downstream 357759 34498807 ~ 34501154 (-) True LOC118943866
XM_021580853.2 mRNA upstream 56362 34915502 ~ 34928362 (-) False LOC110502644
XM_036960316.1 mRNA upstream 56362 34915502 ~ 34929983 (-) False LOC110502644
XR_002470356.2 mRNA upstream 56362 34915502 ~ 34929983 (-) False LOC110502644
XM_036960317.1 mRNA upstream 56362 34915502 ~ 34936389 (-) True LOC110502644
XM_021580856.2 mRNA upstream 193756 35052896 ~ 35059019 (-) True LOC110502648
TU2126883 other downstream 17251 34839900 ~ 34841662 (-) True G1858575
TU2126826 other downstream 37348 34820776 ~ 34821565 (-) True G1858519
TU2126422 other downstream 671043 34177057 ~ 34187870 (-) False kcnma1a
TU2125229 other downstream 1257072 33596158 ~ 33601841 (-) True LOC110502621
TU2124286 other downstream 2212773 32637425 ~ 32646140 (-) True G1856217
TU2126950 other upstream 77549 34936689 ~ 34968861 (-) True G1858636
TU2127381 other upstream 383974 35243114 ~ 35243589 (-) True G1859038
TU2128534 other upstream 1095080 35954220 ~ 35959205 (-) False LOC110502661
TU2128895 other upstream 1589691 36448831 ~ 36451459 (-) True G1860462
TU2129907 other upstream 2475887 37335027 ~ 37335414 (-) True G1861368

Expression Profile