RNA id: TU2126900


Basic Information

Item Value
RNA id TU2126900
length 758
lncRNA type intronic
GC content 0.35
exon number 1
gene id G1858592
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 34861660 ~ 34862417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcacgttctgacctttatttccgttgttttgtatttatttagtatggtcagggcgtgagttgggtgggcagtctatgtttgtttttctatgatttgggtatttctatgtttcggcctagtatggttctcaatcagaggtaggtgtcattagttgtctctgattgagaatcatactgaggtagcctgggtttcactgtgtttgtgggtgattgttcctgtctctgtgtttgcaccagatagggctgttttgagttttcacatttcttgttttgtttattcatgtatagtgtctttagTAAAGtaccatgaataaccaccacgctgcagtttgatccgcctctccttcaccacaggaaaacccttacaaacATTCTACAAGAAACAATATCACTCCCTAAAAACACAACTCTGTGGAACAATCCTTCaatagcttttcagaattcactgATAAATTGGTtcacatggaaaactaaaggtAAATGACTTGGTAATAGGAAATGTAAAAAGTTCCATGACAgaattcaaaatacattttagaccAGCTAATGTAGCTATTTTCAAATTAATTAAAGTTTCATATCACAAaatctgtatttgaaatattttgggACATCAGAGCAATCTTGAGGGAATgctatttgagtcagaaaaggatATTCATATGATAGGTAAATTACAGGAAATGAAAATGTACACTTAATCCAGTTTAAACTAATGTATAGAATTGATTCTACAAAATCCACAAATTCGACAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2126896 lncRNA downstream 2520 34858913 ~ 34859140 (-) True G1858588
TU2126895 lncRNA downstream 3278 34858175 ~ 34858382 (-) True G1858587
TU2126891 lncRNA downstream 7260 34854165 ~ 34854400 (-) True G1858583
TU2126889 lncRNA downstream 9529 34851874 ~ 34852131 (-) True G1858581
TU2126885 lncRNA downstream 17489 34843945 ~ 34844171 (-) True G1858577
TU2126903 lncRNA upstream 5146 34867563 ~ 34867784 (-) True G1858595
TU2126907 lncRNA upstream 10289 34872706 ~ 34873135 (-) True G1858599
TU2126908 lncRNA upstream 13201 34875618 ~ 34876183 (-) True G1858600
TU2126909 lncRNA upstream 15202 34877619 ~ 34878058 (-) True G1858601
TU2126912 lncRNA upstream 16262 34878679 ~ 34879051 (-) False G1858602
XM_021580850.2 mRNA downstream 24019 34823020 ~ 34837641 (-) True slc25a16
XM_021580849.2 mRNA downstream 24025 34823020 ~ 34837635 (-) False slc25a16
XM_036960311.1 mRNA downstream 51542 34794341 ~ 34810118 (-) True LOC110502637
XM_036960308.1 mRNA downstream 288599 34548636 ~ 34573061 (-) True anxa11a
XR_005039173.1 mRNA downstream 360506 34498807 ~ 34501154 (-) True LOC118943866
XM_021580853.2 mRNA upstream 53085 34915502 ~ 34928362 (-) False LOC110502644
XM_036960316.1 mRNA upstream 53085 34915502 ~ 34929983 (-) False LOC110502644
XR_002470356.2 mRNA upstream 53085 34915502 ~ 34929983 (-) False LOC110502644
XM_036960317.1 mRNA upstream 53085 34915502 ~ 34936389 (-) True LOC110502644
XM_021580856.2 mRNA upstream 190479 35052896 ~ 35059019 (-) True LOC110502648
TU2126883 other downstream 19998 34839900 ~ 34841662 (-) True G1858575
TU2126826 other downstream 40095 34820776 ~ 34821565 (-) True G1858519
TU2126422 other downstream 673790 34177057 ~ 34187870 (-) False kcnma1a
TU2125229 other downstream 1259819 33596158 ~ 33601841 (-) True LOC110502621
TU2124286 other downstream 2215520 32637425 ~ 32646140 (-) True G1856217
TU2126950 other upstream 74272 34936689 ~ 34968861 (-) True G1858636
TU2127381 other upstream 380697 35243114 ~ 35243589 (-) True G1859038
TU2128534 other upstream 1091803 35954220 ~ 35959205 (-) False LOC110502661
TU2128895 other upstream 1586414 36448831 ~ 36451459 (-) True G1860462
TU2129907 other upstream 2472610 37335027 ~ 37335414 (-) True G1861368

Expression Profile