RNA id: TU2126914


Basic Information

Item Value
RNA id TU2126914
length 391
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G1858603
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 34879712 ~ 34880102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGGGGAGAGGAAGCTGCATATAGATCTTTACCCAGGGGAGACTTAAACCTTGAGTGTTGGAACCTACCTCTCTGGGGAAGGCTGAGAGCACCTGCAGGGCCCCAGTCTGGATCTTGGCCCACTGGCCATTGGCACTGCCAAACTCATCCCTCTGTGAGATCTTATAAAGGGGCAGGACGTGGAGCTGTTCGTCCTCAGGGACGTTACGCACCGCACGGTTGTCCTCCTTGGTTAAAGTGCAAACCTGCAGGACGGTGAGACATTTTACGCAAATGGAAAAGACTAGCACAGTATCTCCCAGATTTCCGGGATAAAATGCCTATCTTGGTGGAAGTGAAAACAGGTATTTTTGGTATTttgttaggatccccattagctgttgaaaaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2126912 lncRNA downstream 661 34878679 ~ 34879051 (-) False G1858602
TU2126910 lncRNA downstream 661 34878828 ~ 34879051 (-) True G1858602
TU2126909 lncRNA downstream 1654 34877619 ~ 34878058 (-) True G1858601
TU2126908 lncRNA downstream 3529 34875618 ~ 34876183 (-) True G1858600
TU2126907 lncRNA downstream 6577 34872706 ~ 34873135 (-) True G1858599
TU2126915 lncRNA upstream 217 34880319 ~ 34880621 (-) True G1858604
TU2126823 lncRNA upstream 26455 34906557 ~ 34909136 (-) True G1858516
TU2126932 lncRNA upstream 29348 34909450 ~ 34909649 (-) True G1858620
TU2126943 lncRNA upstream 49069 34929171 ~ 34929514 (-) True G1858630
TU2126970 lncRNA upstream 98108 34978210 ~ 34979783 (-) True G1858656
XM_021580850.2 mRNA downstream 42071 34823020 ~ 34837641 (-) True slc25a16
XM_021580849.2 mRNA downstream 42077 34823020 ~ 34837635 (-) False slc25a16
XM_036960311.1 mRNA downstream 69594 34794341 ~ 34810118 (-) True LOC110502637
XM_036960308.1 mRNA downstream 306651 34548636 ~ 34573061 (-) True anxa11a
XR_005039173.1 mRNA downstream 378558 34498807 ~ 34501154 (-) True LOC118943866
XM_021580853.2 mRNA upstream 35400 34915502 ~ 34928362 (-) False LOC110502644
XM_036960316.1 mRNA upstream 35400 34915502 ~ 34929983 (-) False LOC110502644
XR_002470356.2 mRNA upstream 35400 34915502 ~ 34929983 (-) False LOC110502644
XM_036960317.1 mRNA upstream 35400 34915502 ~ 34936389 (-) True LOC110502644
XM_021580856.2 mRNA upstream 172794 35052896 ~ 35059019 (-) True LOC110502648
TU2126883 other downstream 38050 34839900 ~ 34841662 (-) True G1858575
TU2126826 other downstream 58147 34820776 ~ 34821565 (-) True G1858519
TU2126422 other downstream 691842 34177057 ~ 34187870 (-) False kcnma1a
TU2125229 other downstream 1277871 33596158 ~ 33601841 (-) True LOC110502621
TU2124286 other downstream 2233572 32637425 ~ 32646140 (-) True G1856217
TU2126950 other upstream 56587 34936689 ~ 34968861 (-) True G1858636
TU2127381 other upstream 363012 35243114 ~ 35243589 (-) True G1859038
TU2128534 other upstream 1074118 35954220 ~ 35959205 (-) False LOC110502661
TU2128895 other upstream 1568729 36448831 ~ 36451459 (-) True G1860462
TU2129907 other upstream 2454925 37335027 ~ 37335414 (-) True G1861368

Expression Profile