RNA id: TU2126970


Basic Information

Item Value
RNA id TU2126970
length 1508
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G1858656
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 34978210 ~ 34979783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACTCCTTTAATTCTGCACAGGACAGCCATACAGTACATTTTCAATAGAAAAATTATATGCTTTGGGCTCATGTCTCAAGTTAGGCTCTCATCCAGAAATGCATACATACACCATCACACCTGGTGCCCAAACATTGAGGGACAGAATCATAACTCCTCACACAGTTCTACAACAACCCCAGAACAGAAAACATCACTTCTAGAACATCCATAATTCTACAACAGAACTCCAGTAGTATTCTCATGTTGTTTTAGTCTAGAATCACAACCATTCTATCCTTGGTCAAAAGGCAGGATGAGACCTAGGGCTCCAGTTCCTTTGATGTTAGTTGAGACATTCAGCTTATGGTTTGGCTTTGCATTTACTTCACTTTCAATAAACAAACAACTCAATGCTAAACAATCCCACCCTGGATAGATGTAACATAGACCACACGACTGACTGACTACCATGGTCTCACAACTCCTGGGATCAAACAAGCTTGCTACTGGAAGAGGCCTCAAGAGACTGAGGTTTCTCATAAGGAGATGCATGCAATACTACTGCCGTATTCATTGGGGACTAAACGGAAGCAAACTGGCCAAAATGGGGAGGTACTATCTGAACGTGTCCAATAAGAATCCGTTACTTTGTTAGTGttccctaatgaatacaacccatgTCTCAAAACAGTGGCAGCCAGTCTAGTCAGTTACATAGATTAGTAGGATGAGGAAATACAAAATGATCAATTACTTTATTGATCAGCTgtcagggagaagaggaggaacatGTTATAGTCATTCTGTTGACTCATCAAAAACATATCTTCTTCAAGGTCCTCATCCCTCCCCTCTAAATatcattgtttatttattttaaatatatatattttttttatgaattcACTTGAACATAAATAACACCATTATTGCTAATTAGAATGATCTGAAATAAGGTACTACTCACACATACTGGCATCAATGTTGTGTTACTATTTGGGTAGGGCTATGAACGAGTAAACCAATGCAGactaaaacaaaacatttaaattaTCATGAGCAACTGAGGCAGCTACAAAAATGAAAAATGTATACCGTAAGCAAAGAAGCACTTCTCAATGAAATGAACACAATTTTGAACAAAATAGTTATTAATAGTTTCACAATTAGAACGCATCATAATAACCCGAGAATCAAACTAACTGATTTCAAACCAATGaaattaacattttattttcaggTGGAAACAGTGAGGTCACTTAAACATTATAACTAATTAAGTGAACGCTtatgtcccaaatgccaccctattccctacatagtgcactacgggattCAACCACACAATGCCAATCTATTTATGGCCATGAGAAAGAAAACAACTACTATAGACCCAAATGAAACTGGTTTTTAGTGCATATGTACAGGATTTGTAAGAAGTGTGTCCGATTACACAACTCATTCTTTCATTCGTCTGAACCATTAGTTGTTTGGGATTTTTGGTCAGCTGCGGCTTCTGAGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2126943 lncRNA downstream 48696 34929171 ~ 34929514 (-) True G1858630
TU2126932 lncRNA downstream 68561 34909450 ~ 34909649 (-) True G1858620
TU2126823 lncRNA downstream 69074 34906557 ~ 34909136 (-) True G1858516
TU2126915 lncRNA downstream 97589 34880319 ~ 34880621 (-) True G1858604
TU2126914 lncRNA downstream 98108 34879712 ~ 34880102 (-) True G1858603
TU2127033 lncRNA upstream 4736 34984519 ~ 34984974 (-) True G1858717
TU2127044 lncRNA upstream 21256 35001039 ~ 35004369 (-) True G1858728
TU2127309 lncRNA upstream 144251 35124034 ~ 35124485 (-) True G1858966
TU2127321 lncRNA upstream 159326 35139109 ~ 35139376 (-) True G1858978
TU2127327 lncRNA upstream 170599 35150382 ~ 35150615 (-) True G1858984
XM_036960317.1 mRNA downstream 41821 34915502 ~ 34936389 (-) True LOC110502644
XM_036960316.1 mRNA downstream 48227 34915502 ~ 34929983 (-) False LOC110502644
XR_002470356.2 mRNA downstream 48227 34915502 ~ 34929983 (-) False LOC110502644
XM_021580853.2 mRNA downstream 49848 34915502 ~ 34928362 (-) False LOC110502644
XM_021580850.2 mRNA downstream 140569 34823020 ~ 34837641 (-) True slc25a16
XM_021580856.2 mRNA upstream 73113 35052896 ~ 35059019 (-) True LOC110502648
XM_036959900.1 mRNA upstream 85563 35065346 ~ 35066105 (-) True LOC110503106
XM_021580859.2 mRNA upstream 216410 35196193 ~ 35222086 (-) False LOC110502651
XR_005039178.1 mRNA upstream 216410 35196193 ~ 35222086 (-) True LOC110502651
XM_021580860.2 mRNA upstream 346907 35326690 ~ 35338242 (-) False LOC110502652
TU2126950 other downstream 9349 34936689 ~ 34968861 (-) True G1858636
TU2126883 other downstream 136548 34839900 ~ 34841662 (-) True G1858575
TU2126826 other downstream 156645 34820776 ~ 34821565 (-) True G1858519
TU2126422 other downstream 790340 34177057 ~ 34187870 (-) False kcnma1a
TU2125229 other downstream 1376369 33596158 ~ 33601841 (-) True LOC110502621
TU2127381 other upstream 263331 35243114 ~ 35243589 (-) True G1859038
TU2128534 other upstream 974437 35954220 ~ 35959205 (-) False LOC110502661
TU2128895 other upstream 1469048 36448831 ~ 36451459 (-) True G1860462
TU2129907 other upstream 2355244 37335027 ~ 37335414 (-) True G1861368
TU2130947 other upstream 3176966 38156749 ~ 38157209 (-) True G1862272

Expression Profile