RNA id: TU2127309



Basic Information


Item Value
RNA id TU2127309
length 218
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1858966
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 35124034 ~ 35124485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atcacatacacatggttagcagatgttattgtgagtgtagcaaaatgcttgtgcttctagttctgacagtgcagtaatatctaaccataATCAAACAATTCCACAACACCTACCTGTCACCGATacctccggaactttcattacgcacacctgtcccctattcccactgattagtacttgtataagtgtgtcctttggtttGGGCTTAAtaaaaaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2127044 lncRNA downstream 119665 35001039 ~ 35004369 (-) True G1858728
TU2127033 lncRNA downstream 139060 34984519 ~ 34984974 (-) True G1858717
TU2126970 lncRNA downstream 144251 34978210 ~ 34979783 (-) True G1858656
TU2126943 lncRNA downstream 194520 34929171 ~ 34929514 (-) True G1858630
TU2126932 lncRNA downstream 214385 34909450 ~ 34909649 (-) True G1858620
TU2127321 lncRNA upstream 14624 35139109 ~ 35139376 (-) True G1858978
TU2127327 lncRNA upstream 25897 35150382 ~ 35150615 (-) True G1858984
TU2127328 lncRNA upstream 26274 35150759 ~ 35150982 (-) True G1858985
TU2127332 lncRNA upstream 32307 35156792 ~ 35157022 (-) True G1858989
TU2127334 lncRNA upstream 34014 35158499 ~ 35158713 (-) True G1858991
XM_036959900.1 mRNA downstream 57929 35065346 ~ 35066105 (-) True LOC110503106
XM_021580856.2 mRNA downstream 65015 35052896 ~ 35059019 (-) True LOC110502648
XM_036960317.1 mRNA downstream 187645 34915502 ~ 34936389 (-) True LOC110502644
XM_036960316.1 mRNA downstream 194051 34915502 ~ 34929983 (-) False LOC110502644
XR_002470356.2 mRNA downstream 194051 34915502 ~ 34929983 (-) False LOC110502644
XM_021580859.2 mRNA upstream 71708 35196193 ~ 35222086 (-) False LOC110502651
XR_005039178.1 mRNA upstream 71708 35196193 ~ 35222086 (-) True LOC110502651
XM_021580860.2 mRNA upstream 202205 35326690 ~ 35338242 (-) False LOC110502652
XM_036960354.1 mRNA upstream 202205 35326690 ~ 35340623 (-) False LOC110502652
XM_036960353.1 mRNA upstream 202205 35326690 ~ 35342828 (-) False LOC110502652
TU2126950 other downstream 155173 34936689 ~ 34968861 (-) True G1858636
TU2126883 other downstream 282372 34839900 ~ 34841662 (-) True G1858575
TU2126826 other downstream 302469 34820776 ~ 34821565 (-) True G1858519
TU2126422 other downstream 936164 34177057 ~ 34187870 (-) False kcnma1a
TU2125229 other downstream 1522193 33596158 ~ 33601841 (-) True LOC110502621
TU2127381 other upstream 118629 35243114 ~ 35243589 (-) True G1859038
TU2128534 other upstream 829735 35954220 ~ 35959205 (-) False LOC110502661
TU2128895 other upstream 1324346 36448831 ~ 36451459 (-) True G1860462
TU2129907 other upstream 2210542 37335027 ~ 37335414 (-) True G1861368
TU2130947 other upstream 3032264 38156749 ~ 38157209 (-) True G1862272

Expression Profile