RNA id: TU2127385


Basic Information

Item Value
RNA id TU2127385
length 747
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1859039
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 35243629 ~ 35244508 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaccctgctaggtaaagtccccccttatctcagctcgctggtcaccatagcatctcccacctgtagcacacgctccagcaggtatatctctctagtcacccccaaaaccaattctttctttggccgcctctctttccagttctctgctgccaatgactggaacgaactacaaaaatctctgaaactggaaacacttatctccctcactagctttaagcacctactgtcagagcagctcacagattactgcacctgtacatagcccacctataatttagccctatcaactacctctttcccaactgtatttcgtttatttatttattttgctcctttgcaccccattatttttatttctactttgcacattcttccattgcaaaactaccattccagtgttttacttgctatattgtatttaccttgccaccaaggccttttttgcctttacctcccttctcacctcatttgctcacattgtatatagacttgtttatactttattattgactgtatgtttgttttactccatgtgtaactctgtgttgttgtatctgtcgaactgctttgctttatcttggccaggtcgcaattgtaaatgagaacttgttctcaacttgcctacctggttaaataaaggtaaaataaaaaaataaaaataaaaaataaaaaattttaCCTTCTTGAAAGACAagtggcaaatcatttgtaaaaatagagaagTAACGGCCCAAGTTAACTACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2127354 lncRNA downstream 56794 35186636 ~ 35186835 (-) True G1859011
TU2127345 lncRNA downstream 71978 35171338 ~ 35171651 (-) True G1859002
TU2127341 lncRNA downstream 76582 35166794 ~ 35167047 (-) True G1858998
TU2127336 lncRNA downstream 82228 35161114 ~ 35161401 (-) True G1858993
TU2127335 lncRNA downstream 83211 35160210 ~ 35160418 (-) True G1858992
TU2127407 lncRNA upstream 25657 35270032 ~ 35274365 (-) True G1859059
TU2127427 lncRNA upstream 52976 35297351 ~ 35297664 (-) True G1859077
TU2127443 lncRNA upstream 77058 35321433 ~ 35322599 (-) True G1859093
TU2127476 lncRNA upstream 118694 35363069 ~ 35363284 (-) True G1859125
TU2127495 lncRNA upstream 133730 35378105 ~ 35378307 (-) True G1859144
XM_021580859.2 mRNA downstream 21543 35196193 ~ 35222086 (-) False LOC110502651
XR_005039178.1 mRNA downstream 21543 35196193 ~ 35222086 (-) True LOC110502651
XM_036959900.1 mRNA downstream 177524 35065346 ~ 35066105 (-) True LOC110503106
XM_021580856.2 mRNA downstream 184610 35052896 ~ 35059019 (-) True LOC110502648
XM_036960317.1 mRNA downstream 307240 34915502 ~ 34936389 (-) True LOC110502644
XM_021580860.2 mRNA upstream 82315 35326690 ~ 35338242 (-) False LOC110502652
XM_036960354.1 mRNA upstream 82315 35326690 ~ 35340623 (-) False LOC110502652
XM_036960353.1 mRNA upstream 82315 35326690 ~ 35342828 (-) False LOC110502652
XM_036960355.1 mRNA upstream 82315 35326690 ~ 35342828 (-) True LOC110502652
XM_036960330.1 mRNA upstream 156458 35400833 ~ 35431674 (-) False LOC110502653
TU2127381 other downstream 40 35243114 ~ 35243589 (-) True G1859038
TU2126950 other downstream 274768 34936689 ~ 34968861 (-) True G1858636
TU2126883 other downstream 401967 34839900 ~ 34841662 (-) True G1858575
TU2126826 other downstream 422064 34820776 ~ 34821565 (-) True G1858519
TU2126422 other downstream 1055759 34177057 ~ 34187870 (-) False kcnma1a
TU2128534 other upstream 709845 35954220 ~ 35959205 (-) False LOC110502661
TU2128895 other upstream 1204456 36448831 ~ 36451459 (-) True G1860462
TU2129907 other upstream 2090652 37335027 ~ 37335414 (-) True G1861368
TU2130947 other upstream 2912374 38156749 ~ 38157209 (-) True G1862272
TU2132816 other upstream 4205022 39449397 ~ 39453415 (-) True G1864033

Expression Profile