RNA id: TU2127443


Basic Information

Item Value
RNA id TU2127443
length 969
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G1859093
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 35321433 ~ 35322599 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGTGTGACGAGGTCTAGGGTTTATTGTGCTTTGCATTCTCATACAGACCTGTTTCAGGCACCCTGGCCATAGTGAGGCAGTGTGTGTTTGGATATCGAACCTGCTCCCCTCGTTGCCGAGTTTACAGTCAGGTCTTCATTAATAACACAGACCACACACAAGTCACGCTTGAGTACCTGAACAGGTAACACATTCATTCACAGGTAAACATGAAATACATAGAATCCAGATGCATTGAGCAGTgcttcccaaccctggtcctcAGAACCATGCATTCCTCAAGTTGAGTTCGACTCCATTGGAGACATCAATAAAAGCGTGAAACACACCATCGTAGATCTACTTCTCTTTCCCAAAGGATGAGTAATGTACAAGTGTTCTCACAGTTTAGTGCATGCTGTAAGGTCCCTGACTGAGAATGTCTTTAACCAGGTAAGACatgagaacacattctcttttACAATAACGACCTGACCCAGGCCTTTAGGCTATAGAACACATCTAGAGAAAAGAGAAGCTACACATTCATTTTCCAATGGGCTTATGAGTGCAGGAAGTTAAGGGTGTAGGAGCTAATGAGCATACTAGAACATTCACATTTTTATCGAGGAATTGACACGTTTCATATGTCCTATGATAGGTGGAGCTAGCAATCTGAGAACTCAAAGGTTAACCAATGTGAACGACAGATACGGAAAATGCCCTTTTCTAGATCAAATGTCAGATGTTTTGTAATCATACAAAACTCAACACTTGCATTGTTGTTTGCATAAGGTTCAGTTTTGAAGGGAATTGAGAAAAGACAAATGCAGGAAATAACCAAGTAGTTGTGTCTGAGGCCTCTTTATCAGTGTTGAACTAATGCTACTTACAAAAACTCAAATCTATTGCACTGGCACAATTCTATTCACAGCCTCTAAAACATCTTCATTCTCCACTTTGTTGCCAAACTCCTTCTCCCTGTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2127427 lncRNA downstream 23769 35297351 ~ 35297664 (-) True G1859077
TU2127407 lncRNA downstream 47068 35270032 ~ 35274365 (-) True G1859059
TU2127383 lncRNA downstream 76925 35243629 ~ 35244508 (-) False G1859039
TU2127385 lncRNA downstream 77058 35243629 ~ 35244375 (-) False G1859039
TU2127382 lncRNA downstream 77058 35243921 ~ 35244375 (-) True G1859039
TU2127476 lncRNA upstream 40470 35363069 ~ 35363284 (-) True G1859125
TU2127495 lncRNA upstream 55506 35378105 ~ 35378307 (-) True G1859144
TU2128169 lncRNA upstream 78236 35400835 ~ 35404770 (-) False LOC110502653
TU2128171 lncRNA upstream 85908 35408507 ~ 35408728 (-) True G1859781
TU2128178 lncRNA upstream 95117 35417716 ~ 35418034 (-) True G1859788
XM_021580859.2 mRNA downstream 99347 35196193 ~ 35222086 (-) False LOC110502651
XR_005039178.1 mRNA downstream 99347 35196193 ~ 35222086 (-) True LOC110502651
XM_036959900.1 mRNA downstream 255328 35065346 ~ 35066105 (-) True LOC110503106
XM_021580856.2 mRNA downstream 262414 35052896 ~ 35059019 (-) True LOC110502648
XM_036960317.1 mRNA downstream 385044 34915502 ~ 34936389 (-) True LOC110502644
XM_021580860.2 mRNA upstream 4091 35326690 ~ 35338242 (-) False LOC110502652
XM_036960354.1 mRNA upstream 4091 35326690 ~ 35340623 (-) False LOC110502652
XM_036960353.1 mRNA upstream 4091 35326690 ~ 35342828 (-) False LOC110502652
XM_036960355.1 mRNA upstream 4091 35326690 ~ 35342828 (-) True LOC110502652
XM_036960330.1 mRNA upstream 78234 35400833 ~ 35431674 (-) False LOC110502653
TU2127381 other downstream 77844 35243114 ~ 35243589 (-) True G1859038
TU2126950 other downstream 352572 34936689 ~ 34968861 (-) True G1858636
TU2126883 other downstream 479771 34839900 ~ 34841662 (-) True G1858575
TU2126826 other downstream 499868 34820776 ~ 34821565 (-) True G1858519
TU2126422 other downstream 1133563 34177057 ~ 34187870 (-) False kcnma1a
TU2128534 other upstream 631621 35954220 ~ 35959205 (-) False LOC110502661
TU2128895 other upstream 1126232 36448831 ~ 36451459 (-) True G1860462
TU2129907 other upstream 2012428 37335027 ~ 37335414 (-) True G1861368
TU2130947 other upstream 2834150 38156749 ~ 38157209 (-) True G1862272
TU2132816 other upstream 4126798 39449397 ~ 39453415 (-) True G1864033

Expression Profile