RNA id: TU2128509


Basic Information

Item Value
RNA id TU2128509
length 2440
lncRNA type inter_gene
GC content 0.32
exon number 4
gene id G1860109
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 35874126 ~ 35877813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatgtttttttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttccttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaaaattttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaaaattttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgcatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttccttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaaaattttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaaaattttagatgtatttttttttctttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaaaattttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaaaattttagatgtatttttttttgtttccttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaataggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttcttactttttcaaagtcactgtgcatttggaatatgttttaatgggcaggtaccatcacgaatttgttcatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtttatcgaatttgtttatgtttccttactttttcaaagtcactgtgcatttgcaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaattttttagatgtatttttttttgtttccttactttttcaaagtcactgtgcatttggaatatgtttcaatgggcaggtaccatcacgaatttgtcatgctcaaaaaattttagatgtattttttttgtttcttactttttcaaagtcactgtgcatttgcaatatgttttaatgggcaggtaccatcacgaatttgtcatgctataaaaatcctgcaggaatgtgaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2128304 lncRNA downstream 108279 35591049 ~ 35765847 (-) True G1859911
TU2128405 lncRNA downstream 138781 35733353 ~ 35735345 (-) True G1860010
TU2128358 lncRNA downstream 209293 35661259 ~ 35664833 (-) True G1859964
TU2128351 lncRNA downstream 218413 35655334 ~ 35655713 (-) True G1859957
TU2128278 lncRNA downstream 247875 35549638 ~ 35626251 (-) True G1859887
TU2128523 lncRNA upstream 76407 35954220 ~ 35955060 (-) False LOC110502661
TU2128527 lncRNA upstream 76407 35954220 ~ 35955060 (-) False LOC110502661
TU2128526 lncRNA upstream 76465 35954278 ~ 35959205 (-) False LOC110502661
TU2128530 lncRNA upstream 76465 35954278 ~ 35955060 (-) False LOC110502661
TU2128531 lncRNA upstream 76465 35954278 ~ 35955060 (-) False LOC110502661
XM_036960335.1 mRNA downstream 273505 35545574 ~ 35600621 (-) False LOC110503108
XM_036960336.1 mRNA downstream 286196 35545574 ~ 35587930 (-) False LOC110503108
XM_036960331.1 mRNA downstream 373176 35400833 ~ 35500950 (-) False LOC110502653
XM_021580872.2 mRNA upstream 86281 35964094 ~ 36014458 (-) False LOC110502661
XM_021580871.2 mRNA upstream 110023 35987836 ~ 36014458 (-) False LOC110502661
XM_021580874.2 mRNA upstream 750695 36628508 ~ 36629750 (-) True marveld1
XM_036960375.1 mRNA upstream 776338 36654151 ~ 36666245 (-) False LOC110502666
XM_036960376.1 mRNA upstream 776338 36654151 ~ 36666245 (-) True LOC110502666
TU2127381 other downstream 630537 35243114 ~ 35243589 (-) True G1859038
TU2126950 other downstream 905265 34936689 ~ 34968861 (-) True G1858636
TU2126883 other downstream 1032464 34839900 ~ 34841662 (-) True G1858575
TU2126826 other downstream 1052561 34820776 ~ 34821565 (-) True G1858519
TU2126422 other downstream 1686256 34177057 ~ 34187870 (-) False kcnma1a
TU2128534 other upstream 76407 35954220 ~ 35959205 (-) False LOC110502661
TU2128895 other upstream 571018 36448831 ~ 36451459 (-) True G1860462
TU2129907 other upstream 1457214 37335027 ~ 37335414 (-) True G1861368
TU2130947 other upstream 2278936 38156749 ~ 38157209 (-) True G1862272
TU2132816 other upstream 3571584 39449397 ~ 39453415 (-) True G1864033

Expression Profile