RNA id: TU2132816


Basic Information

Item Value
RNA id TU2132816
length 514
RNA type TUCP
GC content 0.44
exon number 2
gene id G1864033
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 39449397 ~ 39453415 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaaaaaaactaaatgttCTTGCCTCGTGTCAGACTGCAGGAAAGGATTGTTGAAGTTCAAAGAAAAATGTTAACCCATTGGAATTCTACTTTATCAAAGCATGGAGTTATTCAACAAGCGTGAGACTGCTGCTGGTATTATAGTGAACAGGCGATCAATCCCTGGCAGAAAGTCAATAAAGTTATAGCTAGATAAATGGCAGCAATTGGTTGTGTCTGTTTTCCAATCGTCTCACCAAAGGTCATTCTGCCACTGATAATCTCAGGGCTTTTCTTCATGTCACTGATGGCAGCTATGGGCAGACCCCAGTTGGCCACAGGTCCCCAGAAGTGCTGGCTCATGAGATACTCTCTGAACTCCTTGCTTTTAAGATGGTCAACAGCTTTACGTGCCAAAGTACCTGCCATGACTGTGGTGGTTAGCAGTGCAGAGAAAATTATAACTATGGGAATGTACACGCGATATAAATGCAGCTTAGCTGTAGAGGACACTGGTGGTCACAGCTCGTCACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2132859 lncRNA downstream 16538 39431458 ~ 39432859 (-) True G1864068
TU2132822 lncRNA downstream 54951 39393281 ~ 39394446 (-) False G1864039
TU2132823 lncRNA downstream 54951 39393281 ~ 39394446 (-) True G1864039
TU2132755 lncRNA downstream 170250 39278898 ~ 39279147 (-) True G1863977
TU2132400 lncRNA downstream 232790 39216354 ~ 39216607 (-) True G1863654
TU2132884 lncRNA upstream 65329 39518744 ~ 39521699 (-) True G1864091
TU2132901 lncRNA upstream 121761 39575176 ~ 39576072 (-) True G1864107
TU2132900 lncRNA upstream 123405 39576820 ~ 39577358 (-) True G1864106
TU2132928 lncRNA upstream 142366 39595781 ~ 39609326 (-) True G1864127
TU2132938 lncRNA upstream 157156 39610571 ~ 39611460 (-) True G1864134
XM_021580965.2 mRNA downstream 65233 39359063 ~ 39384164 (-) True myom2b
XM_021580958.2 mRNA downstream 863471 38536134 ~ 38585926 (-) False mcph1
XM_021580960.2 mRNA downstream 863479 38536134 ~ 38585918 (-) False mcph1
XM_036960423.1 mRNA downstream 863479 38568452 ~ 38585918 (-) True mcph1
XM_036960422.1 mRNA downstream 863593 38536134 ~ 38585804 (-) False mcph1
XM_021580968.2 mRNA upstream 4357 39457772 ~ 39473633 (-) False LOC110502717
XM_021580969.2 mRNA upstream 4357 39457772 ~ 39473633 (-) True LOC110502717
XM_021580977.2 mRNA upstream 60887 39514302 ~ 39517763 (-) True irf1a
XM_021580983.2 mRNA upstream 207500 39660915 ~ 39666026 (-) True tacr2
XM_021580992.2 mRNA upstream 313376 39766791 ~ 39772600 (-) True hnrnph3
TU2130947 other downstream 1292188 38156749 ~ 38157209 (-) True G1862272
TU2129907 other downstream 2113983 37335027 ~ 37335414 (-) True G1861368
TU2128895 other downstream 2997938 36448831 ~ 36451459 (-) True G1860462
TU2128534 other downstream 3490192 35954220 ~ 35959205 (-) False LOC110502661
TU2127381 other downstream 4205808 35243114 ~ 35243589 (-) True G1859038
TU2134138 other upstream 726414 40179829 ~ 40185212 (-) False srsf2a
TU2134140 other upstream 726414 40179829 ~ 40185212 (-) True srsf2a
TU2137175 other upstream 3461991 42915406 ~ 42978144 (-) True G1868010
TU2138185 other upstream 4033453 43486868 ~ 43501433 (-) True G1868940
TU2141784 other upstream 6574505 46027920 ~ 46029807 (-) True G1872165

Expression Profile