RNA id: TU2138149



Basic Information


Item Value
RNA id TU2138149
length 1999
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1868905
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 43438773 ~ 43440952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTTTAATTCACTAAGTACATTTGTAATAATGTAAAACAGATAtttgacattctgtactgtctccTCACATGAAACATTTGaactcaaatccaaaatgctggagtatagaaacaaatgaaacattttattttcactgtccaaatacataagGAGGAAAGTGTACGTATATATGCAGTGAGTGAGTTATGTGGACATATATCACACATTTGTAATAAAGTTATATGTTAGGTGTCACAAACATTATATTGAATGGACCAAGGGACAGCGTGCGTAGCGTTCCACTTGTTTAATTTAAGAAACTCACCAAAACAGTACAGAAGAAAGGAACGTGACGCTATGGCGTGCTCACAAGCAACAatacataaacaagatcccacaaaaacccagtgggaaaaggctgcctaaatatgatccccaatcagagacaacgatagacagctgcctctgattgggatcaataccaggccaacatagaaattaaaaaactagactacccaccctagttacaccctgacctaaccaaaatagagaataaaaaggatctctaaggtcagagcgtgacattAGGTTCATAACCTAAAACAACTATTGTATTGTTAATGTGTTTATGGGGCTTGTAATTAATGGTGTGAACAAGGGTGACAAAGTAAGATGAAGATTCAGTCACAGATAATATTTCTTGCCAATAGAGAAGGAATGTATCTTTCAACAGCTGCAATTCAACACTGTCTCCTTTTATGGACAGAAATTTGTTGAAAAACTCAAGACTCTCATCAGGCACTAATAACACTGAAGGATTTCAAAAACATAGGCTACATGTTTTGCCATTAACTGACTAACCTCGTCCACGGGCTAATTGCTACCACATAAGTATGGGTTCAACAGAAAGAGAGCCGACTGGTGGACGAGACCATCAACTGACTGACTCCTACAAACCCACATTAATCATCAGTCGCCAACAGGCCTTCCAGCGTAATTGGAGGTATGAAGTATTCCATTCATCCAGATTACTAATTTGAAAGGCAAGTCTAACCTTAATTACGTTTACATGACCATTGGGTAAAAGATCTGAAGCCTTGTGGTTTAAGGTTGAGCCCTGATCAAGAGAGATTCCAGAGGCATGACTAGGTCGAGGCTCCtgggtggtgtggttgtgtgggCGGTGAGGGATGCATGTTGTATAGGGGGATAACCATAAAACAAGCTGTCACTGGTGAGTCACTGGAAGGAGATCTTCACAGATTTGCTACAGTATATTTTCAAGGTTGGAAGTTGGACCATTTTGGAAAAACCTTGGATTGTGAGTAATATAAAAATGCTTTATTGTCGCCCTGTTTGCAAAGACATAgaataaaaatgaaatattatGTTTAAACGTCAGGAGTTAAAATACTTATATTCCTATATGTACAATTATACAACATGATATACATCATATTACGAGTCTAAGGCGGTAATTTCTGTGGGTACATGGACCCTGACGCAAGGGAGGATAGGACTATTCTCTTCTATCCACTTGTAGTACTTGGTCACTGTTGTGTACAGGTCTGGTCGTAATGCTCTAGAACACCCCTCGCCCCAACTGACGATTCCAAAGAGGAACATCCAATTGTCCACTTCACACACCATGGGCCCTCTCGAATCACCCTGgcacgcacgcatctTGACTCCAGTCCGGTTTTCCAGCACATAACATGTTTTCTGTGCTCATGTTTCCTTAGTACTCATGGGCCAAAACATTCACCTTTGCCTCCTGGTACTGTGAATTGTACCATAAACCTTAATGAAGAGAGGACACACATGCTGTATAACAAAGCACTCAACAGGTAAGGAAAAGTATAAATATTGCATTGGCATGAAAACTAGTGAAATTATCATTGGAAGGGAATGGGAATAGATATCAAGTGATTGTTTGATACATTTAGAGGTCTGGGTCGTATTTAAAAAGTGTCTCAGACTCAGTTGCCTTTTAGATTATAATAAATGGACAGGAAGGACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2138086 lncRNA downstream 108687 43329286 ~ 43330086 (-) True G1868842
TU2138067 lncRNA downstream 149286 43289183 ~ 43289487 (-) True G1868823
TU2138051 lncRNA downstream 162082 43274964 ~ 43276691 (-) True G1868810
TU2137529 lncRNA downstream 227147 43211406 ~ 43211626 (-) True G1868353
TU2137480 lncRNA downstream 272665 43165901 ~ 43166108 (-) True G1868307
TU2138170 lncRNA upstream 25024 43465976 ~ 43527171 (-) True G1868926
TU2138357 lncRNA upstream 278887 43719839 ~ 43765207 (-) True G1869102
TU2138369 lncRNA upstream 294590 43735542 ~ 43798670 (-) True G1869111
TU2138453 lncRNA upstream 409164 43850116 ~ 43862471 (-) True G1869194
TU2138512 lncRNA upstream 486398 43927350 ~ 43930401 (-) True G1869236
XM_021581098.2 mRNA downstream 5034 43408822 ~ 43433739 (-) False LOC110502805
XM_021581099.2 mRNA downstream 5034 43408822 ~ 43433739 (-) False LOC110502805
XM_021581100.2 mRNA downstream 5034 43410903 ~ 43433739 (-) True LOC110502805
XM_021581097.2 mRNA downstream 48282 43358726 ~ 43390491 (-) True LOC110502803
XM_021581096.2 mRNA downstream 82530 43313733 ~ 43356243 (-) True LOC110502802
XM_021581106.2 mRNA upstream 433025 43873977 ~ 43875881 (-) True dusp29
XM_036960516.1 mRNA upstream 436726 43877678 ~ 43902551 (-) False LOC110502811
XR_005039204.1 mRNA upstream 436726 43877678 ~ 43902551 (-) False LOC110502811
XM_036960517.1 mRNA upstream 436726 43877678 ~ 43902552 (-) False LOC110502811
XM_036960518.1 mRNA upstream 436726 43877678 ~ 43902553 (-) False LOC110502811
TU2137175 other downstream 460629 42915406 ~ 42978144 (-) True G1868010
TU2134138 other downstream 3253561 40179829 ~ 40185212 (-) False srsf2a
TU2134140 other downstream 3253561 40179829 ~ 40185212 (-) True srsf2a
TU2132816 other downstream 3985358 39449397 ~ 39453415 (-) True G1864033
TU2130947 other downstream 5281564 38156749 ~ 38157209 (-) True G1862272
TU2138185 other upstream 45916 43486868 ~ 43501433 (-) True G1868940
TU2141784 other upstream 2586968 46027920 ~ 46029807 (-) True G1872165
TU2142235 other upstream 3356283 46797235 ~ 46797650 (-) True G1872556
TU2142791 other upstream 3500334 46941286 ~ 46942457 (-) True G1873030
TU2142808 other upstream 3519670 46960622 ~ 46961653 (-) True G1873043

Expression Profile