RNA id: TU2140914


Basic Information

Item Value
RNA id TU2140914
length 309
lncRNA type intronic
GC content 0.51
exon number 3
gene id G1871400
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 44559461 ~ 44569077 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtcatgtactgtcatgttgtcttgtctctgtcctttcccttcaccctgtctccctctgctggtcgtgttaggttaccttttctcccccgctttcccccagctgtcccttgtctcctctaattacccattcaccccgttccccacctgttccctttttccctctgattaggtccctatatctctctctgtttctgctcctgtccttgtcggattcttgtttgtttgtgtcattcatgcctgaaccagactgccgtcatgtttgctgtaaccttgtcctgtcctgtcggaatctgccggtccatctgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2140905 lncRNA downstream 7457 44549880 ~ 44552004 (-) True G1871394
TU2140901 lncRNA downstream 17886 44541117 ~ 44541575 (-) True G1871390
TU2140875 lncRNA downstream 37051 44522001 ~ 44522410 (-) False LOC110503120
TU2140876 lncRNA downstream 37051 44522065 ~ 44522410 (-) True LOC110503120
TU2140892 lncRNA downstream 41994 44517228 ~ 44517467 (-) True G1871381
TU2140922 lncRNA upstream 16975 44586052 ~ 44586638 (-) False G1871408
TU2140923 lncRNA upstream 16975 44586052 ~ 44586638 (-) True G1871408
TU2140877 lncRNA upstream 52740 44621817 ~ 44626347 (-) True G1871366
TU2140997 lncRNA upstream 85994 44655071 ~ 44655308 (-) True G1871471
TU2141016 lncRNA upstream 173604 44742681 ~ 44742896 (-) True G1871490
XM_021581136.2 mRNA downstream 50932 44303654 ~ 44508529 (-) False LOC100301649
XM_021581143.2 mRNA upstream 87881 44656958 ~ 44687274 (-) False LOC110502821
XM_036960527.1 mRNA upstream 87881 44656958 ~ 44687275 (-) True LOC110502821
XM_036960531.1 mRNA upstream 124998 44694075 ~ 44736549 (-) False LOC110502822
XM_036960532.1 mRNA upstream 124998 44694075 ~ 44736549 (-) False LOC110502822
XM_036960533.1 mRNA upstream 124998 44694075 ~ 44736549 (-) False LOC110502822
TU2138185 other downstream 1058028 43486868 ~ 43501433 (-) True G1868940
TU2137175 other downstream 1581317 42915406 ~ 42978144 (-) True G1868010
TU2134138 other downstream 4374249 40179829 ~ 40185212 (-) False srsf2a
TU2134140 other downstream 4374249 40179829 ~ 40185212 (-) True srsf2a
TU2132816 other downstream 5106046 39449397 ~ 39453415 (-) True G1864033
TU2141784 other upstream 1458843 46027920 ~ 46029807 (-) True G1872165
TU2142235 other upstream 2228158 46797235 ~ 46797650 (-) True G1872556
TU2142791 other upstream 2372209 46941286 ~ 46942457 (-) True G1873030
TU2142808 other upstream 2391545 46960622 ~ 46961653 (-) True G1873043
TU2142821 other upstream 2498831 47067908 ~ 47079790 (-) False LOC110502870

Expression Profile