RNA id: TU2140997


Basic Information

Item Value
RNA id TU2140997
length 238
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1871471
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 44655071 ~ 44655308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attgggcgtgcaaaattattcagccccttcactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgttgacctaaatgactaatgatgataaatacaatccacatgtgtgtaatcaagtctccgtataaatgcacctgcactgtgatagtctcagaggtccgttaaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2140877 lncRNA downstream 28724 44621817 ~ 44626347 (-) True G1871366
TU2140922 lncRNA downstream 68433 44586052 ~ 44586638 (-) False G1871408
TU2140923 lncRNA downstream 68433 44586052 ~ 44586638 (-) True G1871408
TU2140914 lncRNA downstream 85994 44559461 ~ 44569077 (-) True G1871400
TU2141016 lncRNA upstream 87373 44742681 ~ 44742896 (-) True G1871490
TU2141024 lncRNA upstream 97415 44752723 ~ 44752975 (-) True G1871497
TU2141028 lncRNA upstream 99064 44754372 ~ 44754608 (-) True G1871501
TU2141030 lncRNA upstream 102561 44757869 ~ 44758168 (-) True G1871503
TU2141031 lncRNA upstream 109990 44765298 ~ 44765612 (-) True G1871504
XM_036959905.1 mRNA downstream 8774 44521978 ~ 44646297 (-) False LOC110503120
XM_021581136.2 mRNA downstream 146542 44303654 ~ 44508529 (-) False LOC100301649
XM_021581143.2 mRNA upstream 1650 44656958 ~ 44687274 (-) False LOC110502821
XM_036960527.1 mRNA upstream 1650 44656958 ~ 44687275 (-) True LOC110502821
XM_036960531.1 mRNA upstream 38767 44694075 ~ 44736549 (-) False LOC110502822
XM_036960532.1 mRNA upstream 38767 44694075 ~ 44736549 (-) False LOC110502822
XM_036960533.1 mRNA upstream 38767 44694075 ~ 44736549 (-) False LOC110502822
TU2138185 other downstream 1153638 43486868 ~ 43501433 (-) True G1868940
TU2137175 other downstream 1676927 42915406 ~ 42978144 (-) True G1868010
TU2134138 other downstream 4469859 40179829 ~ 40185212 (-) False srsf2a
TU2134140 other downstream 4469859 40179829 ~ 40185212 (-) True srsf2a
TU2132816 other downstream 5201656 39449397 ~ 39453415 (-) True G1864033
TU2141784 other upstream 1372612 46027920 ~ 46029807 (-) True G1872165
TU2142235 other upstream 2141927 46797235 ~ 46797650 (-) True G1872556
TU2142791 other upstream 2285978 46941286 ~ 46942457 (-) True G1873030
TU2142808 other upstream 2305314 46960622 ~ 46961653 (-) True G1873043
TU2142821 other upstream 2412600 47067908 ~ 47079790 (-) False LOC110502870

Expression Profile