RNA id: TU2141784


Basic Information

Item Value
RNA id TU2141784
length 667
RNA type TUCP
GC content 0.43
exon number 2
gene id G1872165
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 46027920 ~ 46029807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTACACCACCTTTTCccatgtgaggagaataacaaCATTTCACCTCACCTGTGAAAAACGTCTTATTTACAGGTTCACATGTAAGAAAACCATACATGTAAAAATCAcactttcacatgtgaaaaaaCAAATTTGCTGTTTCATATGTGAAAAACTTTCACGTGAttgtttttcacatgtgaactcgcaattccacatgtgaaagtgaAATCTAATTAGCAGTTttacatgtaaacaaacactattgGCTAAACAACTAGAAatgtgatatcatggatggccagccAAAGCATAGTCTATTGATTAGAGGGTGcttgcatttctccagcccaaTCCCTCATGTATTTCTCCAGCCCAGTCCCTCATGTATTTCTCCAGCCCAGTCCCTCATGTATTTCTCCAGCCCAGTCCCTCATGTATTTCTCCAGCCCAGTCCCTCATGTATTTCTCCAGCCCAATCCCTCATGTATTTCTCCAGCCCAATCCCTCATGTATTTCTCCAGCCCAGTCCCTCATGTATTTCTCCAGCCCAGTCCCTCATGTATTTCTCCAGCCCAGTCCCTCATGTATTTATCCAGCCCACTCCCTCATGTATTTCTCCAGCCCAACTCCCTCATGTATTTCTCCAGCCCAGTCCCTCATGTATTTCTCCAGCCCAGTCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2141769 lncRNA downstream 16463 46010244 ~ 46011457 (-) True G1872152
TU2141766 lncRNA downstream 29515 45997975 ~ 45998405 (-) True G1872149
TU2141736 lncRNA downstream 75629 45951555 ~ 45952291 (-) True G1872126
TU2141694 lncRNA downstream 148850 45878060 ~ 45879070 (-) True G1872087
TU2141691 lncRNA downstream 152237 45875196 ~ 45875683 (-) True G1872084
TU2141827 lncRNA upstream 50879 46080686 ~ 46081125 (-) False G1872192
TU2141828 lncRNA upstream 50879 46080686 ~ 46081125 (-) True G1872192
TU2141130 lncRNA upstream 68422 46098229 ~ 46101202 (-) True G1871577
TU2141820 lncRNA upstream 150656 46180463 ~ 46195149 (-) True G1872188
TU2141825 lncRNA upstream 153363 46183170 ~ 46189866 (-) True G1872190
XM_021581149.2 mRNA downstream 1217550 44806316 ~ 44810370 (-) True LOC110502826
XM_021581148.2 mRNA downstream 1217552 44806316 ~ 44810368 (-) False LOC110502826
NM_001124704.2 mRNA downstream 1226483 44798787 ~ 44801437 (-) True LOC100136752
XM_021581147.2 mRNA downstream 1238517 44777904 ~ 44789403 (-) False si:dkey-76k16.6
XM_036960537.1 mRNA downstream 1238518 44777905 ~ 44789402 (-) False si:dkey-76k16.6
XM_036960546.1 mRNA upstream 147959 46177766 ~ 46183719 (-) True LOC110502833
XM_021592407.2 mRNA upstream 156998 46186805 ~ 46189644 (-) True LOC110511512
XM_036960547.1 mRNA upstream 162943 46192750 ~ 46195303 (-) False LOC110502836
XM_036960548.1 mRNA upstream 162943 46192750 ~ 46195831 (-) True LOC110502836
XM_036960551.1 mRNA upstream 304374 46334181 ~ 46363462 (-) True LOC110502837
TU2138185 other downstream 2526487 43486868 ~ 43501433 (-) True G1868940
TU2137175 other downstream 3049776 42915406 ~ 42978144 (-) True G1868010
TU2134138 other downstream 5842708 40179829 ~ 40185212 (-) False srsf2a
TU2134140 other downstream 5842708 40179829 ~ 40185212 (-) True srsf2a
TU2132816 other downstream 6574505 39449397 ~ 39453415 (-) True G1864033
TU2142235 other upstream 767428 46797235 ~ 46797650 (-) True G1872556
TU2142791 other upstream 911479 46941286 ~ 46942457 (-) True G1873030
TU2142808 other upstream 930815 46960622 ~ 46961653 (-) True G1873043
TU2142821 other upstream 1038101 47067908 ~ 47079790 (-) False LOC110502870
TU2143011 other upstream 1227786 47257593 ~ 47259933 (-) False G1873183

Expression Profile