RNA id: TU2142022



Basic Information


Item Value
RNA id TU2142022
length 222
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1872378
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 46485035 ~ 46485256 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGAAAATCCATCCGTAAATTGGTAGGGTCGTAAGAAAAGCCATGCGTGAAACATTAAACGTAAATGTGAAATTATGTCTGTGAACATACAAACATCATGTTAAGATTACGGACTAATATTTTAGGCTTGAGCAAATAGTGTGATGCAATTCTGATGTACAATAATACCTGTCAGAGTTTTGGCAGTTTCATCTCAGCGACATAAAAACGTACACCAAACGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2142017 lncRNA downstream 8180 46476638 ~ 46476855 (-) True G1872373
TU2142010 lncRNA downstream 16109 46468524 ~ 46468926 (-) True G1872366
TU2142009 lncRNA downstream 16703 46467711 ~ 46468332 (-) True G1872365
TU2142007 lncRNA downstream 18711 46466041 ~ 46466324 (-) True G1872363
TU2142006 lncRNA downstream 19289 46465359 ~ 46465746 (-) True G1872362
TU2142030 lncRNA upstream 14354 46499610 ~ 46499930 (-) True G1872384
TU2142034 lncRNA upstream 17417 46502673 ~ 46502882 (-) True G1872388
TU2142035 lncRNA upstream 18016 46503272 ~ 46503580 (-) True G1872389
TU2142036 lncRNA upstream 18344 46503600 ~ 46503872 (-) True G1872390
TU2142101 lncRNA upstream 105327 46590583 ~ 46592065 (-) True G1872432
XM_021581180.2 mRNA downstream 21584 46459902 ~ 46463451 (-) True mettl9
XM_021581181.2 mRNA downstream 21586 46459902 ~ 46463449 (-) False mettl9
XM_021581183.2 mRNA downstream 25444 46448825 ~ 46459591 (-) True LOC110502849
XM_021581173.2 mRNA downstream 43085 46436849 ~ 46441950 (-) True LOC110502842
XM_036960560.1 mRNA downstream 48287 46425302 ~ 46436748 (-) True LOC110502843
XM_036960563.1 mRNA upstream 33355 46518611 ~ 46529226 (-) False LOC110502844
XM_021581175.2 mRNA upstream 33355 46518611 ~ 46531881 (-) False LOC110502844
XM_036960564.1 mRNA upstream 33355 46518611 ~ 46531928 (-) False LOC110502844
XM_036960565.1 mRNA upstream 34046 46519302 ~ 46531841 (-) False LOC110502844
XM_021581176.2 mRNA upstream 37990 46523246 ~ 46531812 (-) False LOC110502844
TU2141784 other downstream 455228 46027920 ~ 46029807 (-) True G1872165
TU2138185 other downstream 2983602 43486868 ~ 43501433 (-) True G1868940
TU2137175 other downstream 3506891 42915406 ~ 42978144 (-) True G1868010
TU2134138 other downstream 6299823 40179829 ~ 40185212 (-) False srsf2a
TU2142235 other upstream 311979 46797235 ~ 46797650 (-) True G1872556
TU2142791 other upstream 456030 46941286 ~ 46942457 (-) True G1873030
TU2142808 other upstream 475366 46960622 ~ 46961653 (-) True G1873043
TU2142821 other upstream 582652 47067908 ~ 47079790 (-) False LOC110502870
TU2143011 other upstream 772337 47257593 ~ 47259933 (-) False G1873183

Expression Profile