RNA id: TU2146045


Basic Information

Item Value
RNA id TU2146045
length 205
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G1875866
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 49702276 ~ 49702480 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatggcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcgaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2146022 lncRNA downstream 19945 49651150 ~ 49682331 (-) True G1875843
TU2145658 lncRNA downstream 51951 49650107 ~ 49650325 (-) True G1875510
TU2145641 lncRNA downstream 81499 49620574 ~ 49620777 (-) True G1875493
TU2145630 lncRNA downstream 108863 49593001 ~ 49593413 (-) True LOC110502932
TU2145629 lncRNA downstream 109408 49592591 ~ 49592868 (-) False LOC110502932
TU2146051 lncRNA upstream 6910 49709390 ~ 49710801 (-) True G1875872
TU2146062 lncRNA upstream 25075 49727555 ~ 49727821 (-) True G1875881
TU2146071 lncRNA upstream 41876 49744356 ~ 49744949 (-) True G1875890
TU2146076 lncRNA upstream 53865 49756345 ~ 49757382 (-) True G1875895
TU2146077 lncRNA upstream 56222 49758702 ~ 49758978 (-) True G1875896
LOC110502932 mRNA downstream 68412 49591993 ~ 49633864 (-) False LOC110502932
XM_036960726.1 mRNA downstream 114341 49584476 ~ 49587935 (-) True birc5a
XM_021581282.2 mRNA downstream 114521 49584476 ~ 49587755 (-) False birc5a
XM_036960727.1 mRNA downstream 118392 49570041 ~ 49583884 (-) True LOC118943894
XM_021581286.2 mRNA downstream 178414 49513316 ~ 49523862 (-) True LOC110502939
XM_036960706.1 mRNA upstream 29641 49732121 ~ 49843237 (-) False LOC110503141
XM_036960704.1 mRNA upstream 29641 49732121 ~ 49846392 (-) False LOC110503141
XM_036960707.1 mRNA upstream 29641 49732121 ~ 49846392 (-) False LOC110503141
XM_036960705.1 mRNA upstream 29641 49732121 ~ 49855083 (-) False LOC110503141
XR_005039235.1 mRNA upstream 243364 49945844 ~ 49967035 (-) False LOC110502943
TU2145415 other downstream 395141 49304519 ~ 49307135 (-) False G1875310
TU2144859 other downstream 964994 48729612 ~ 48737282 (-) True LOC110502911
TU2144817 other downstream 1060405 48637991 ~ 48641871 (-) True LOC110503133
TU2144319 other downstream 1180604 48520679 ~ 48521672 (-) True LOC110502901
TU2143011 other downstream 2442343 47257593 ~ 47259933 (-) False G1873183
TU2146049 other upstream 79132 49781612 ~ 49846328 (-) True LOC110503141
TU2146182 other upstream 348811 50051291 ~ 50052791 (-) True G1875984
TU2146264 other upstream 509570 50212050 ~ 50214504 (-) False LOC110503025
TU2146732 other upstream 752841 50455321 ~ 50455709 (-) True G1876460
TU2146797 other upstream 1063550 50766030 ~ 50770262 (-) False G1876522

Expression Profile