RNA id: TU2146227


Basic Information

Item Value
RNA id TU2146227
length 311
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1876021
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50045633 ~ 50045943 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTGCAcgcctcccgagtgacgcagcgggATGCAGTGTCTTCACCAAtaaattggtccacatggaaaactaaaggcatagaaaccaTATATGACTTGCTAATAGGAAATACATGACAGCTTTAAACAACTCTTTTGGATTGACCAATCTAGATATTTTCTTTGTAACTTATTTCCCCCCAAAAATGAGCAATCTTGAGTGAAtcctatttgagtcagaaaatgATGTACATATGAAAGGTAAActatacaaaaccttgcagagagcctatccaactgacaatcttccatttgcacacactatatagact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2146223 lncRNA downstream 13616 50031799 ~ 50032017 (-) True G1876017
TU2146222 lncRNA downstream 14958 50030451 ~ 50030675 (-) True G1876016
TU2146221 lncRNA downstream 22659 50022764 ~ 50022974 (-) True G1876015
TU2146219 lncRNA downstream 24145 50021145 ~ 50021488 (-) True G1876013
TU2146218 lncRNA downstream 25195 50020230 ~ 50020438 (-) True G1876012
TU2146186 lncRNA upstream 2924 50048867 ~ 50049071 (-) True G1875988
TU2146175 lncRNA upstream 31580 50077523 ~ 50080699 (-) False LOC110502926
TU2146176 lncRNA upstream 31580 50077523 ~ 50080699 (-) False LOC110502926
TU2146177 lncRNA upstream 31580 50077523 ~ 50080699 (-) True LOC110502926
TU2146267 lncRNA upstream 166107 50212050 ~ 50253060 (-) True LOC110503025
XM_036960714.1 mRNA downstream 2265 50025694 ~ 50043368 (-) True LOC110502925
XM_036960715.1 mRNA downstream 2799 50025694 ~ 50042834 (-) False LOC110502925
XM_021581274.2 mRNA downstream 15945 50025694 ~ 50029688 (-) False LOC110502925
XM_021581287.2 mRNA downstream 25842 50010376 ~ 50019791 (-) False LOC110502940
XM_036960720.1 mRNA downstream 58743 49975399 ~ 49986890 (-) False LOC110502930
XM_036960719.1 mRNA upstream 6891 50052834 ~ 50067792 (-) True LOC110502931
XM_021581275.2 mRNA upstream 32664 50078607 ~ 50101700 (-) False LOC110502926
XM_036960708.1 mRNA upstream 64477 50110420 ~ 50146309 (-) True LOC110503023
XR_005039168.1 mRNA upstream 145581 50191524 ~ 50194275 (-) True LOC118943861
XM_036960731.1 mRNA upstream 169125 50215068 ~ 50251381 (-) False LOC110503025
TU2146049 other downstream 199305 49781612 ~ 49846328 (-) True LOC110503141
TU2145415 other downstream 738498 49304519 ~ 49307135 (-) False G1875310
TU2144859 other downstream 1308351 48729612 ~ 48737282 (-) True LOC110502911
TU2144817 other downstream 1403762 48637991 ~ 48641871 (-) True LOC110503133
TU2144319 other downstream 1523961 48520679 ~ 48521672 (-) True LOC110502901
TU2146182 other upstream 5348 50051291 ~ 50052791 (-) True G1875984
TU2146264 other upstream 166107 50212050 ~ 50214504 (-) False LOC110503025
TU2146732 other upstream 409378 50455321 ~ 50455709 (-) True G1876460
TU2146797 other upstream 720087 50766030 ~ 50770262 (-) False G1876522
TU2146796 other upstream 720153 50766096 ~ 50770262 (-) False G1876522

Expression Profile