RNA id: TU2146270


Basic Information

Item Value
RNA id TU2146270
length 607
lncRNA type read_through
GC content 0.50
exon number 2
gene id G1876052
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50267434 ~ 50269466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGAGAtgggaaagagacagaaagaagatAGATAGTACACTGAAAGGGAGGCTGTTTGAGGCTGTTGTGAGGGATGTCCATATCCCAGAGGGAGAAGAGCAAAGAGAAGGCTGCCATAAAACCCCTGGGAGATCCCATGCACAGCGGTACCTTGACGTGTATCTGGTTGCGCAGCACAGCAGCTCGTAGGATCATGGCTTTGGCTCGCCTCTGGAACTCTTTGCCCATGTGGATCGACTTCTCAAACGTGTGGCTCCGCTGAGAGAGTCTATACGTGCGTTGATCAGTCCCTCCAGTATGAGCTGGGTCAGTTCATCCTCCAGAGATAACACTGTGGTGTTGAAGGACTGGGACATCTTAGTCATGTCTGCAGACACGTACGGGCTGAagtactgtcacacacacacacacacacgcatgaaaaGTACAGAGATACTGtcggcacgcacacacatgcccCTCACCCACACCACTATACCCACTACACCTAAACAAAACAACAGTATAGATTAGAGCAGACCTTCCTGCAAACACACCCAATAATACTGGCCATGGGAGCAAGGGGACAGGAACTGCTGAATGTTTCATGTTCATTTTTTTGACTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2146267 lncRNA downstream 14374 50212050 ~ 50253060 (-) True LOC110503025
TU2146295 lncRNA downstream 29200 50237442 ~ 50238234 (-) True G1876077
TU2146294 lncRNA downstream 30091 50236255 ~ 50237343 (-) True G1876076
TU2146175 lncRNA downstream 186735 50077523 ~ 50080699 (-) False LOC110502926
TU2146176 lncRNA downstream 186735 50077523 ~ 50080699 (-) False LOC110502926
TU2146268 lncRNA upstream 6255 50275721 ~ 50276830 (-) True G1876050
TU2146317 lncRNA upstream 23215 50292681 ~ 50293359 (-) True G1876099
TU2146319 lncRNA upstream 24825 50294291 ~ 50294641 (-) True G1876101
TU2146320 lncRNA upstream 25637 50295103 ~ 50295545 (-) True G1876102
TU2146353 lncRNA upstream 46408 50315874 ~ 50316098 (-) True G1876132
XM_036960732.1 mRNA downstream 13938 50215068 ~ 50253496 (-) False LOC110503025
XM_036960734.1 mRNA downstream 13938 50215068 ~ 50253496 (-) False LOC110503025
XM_036960731.1 mRNA downstream 16053 50215068 ~ 50251381 (-) False LOC110503025
XR_005039168.1 mRNA downstream 73159 50191524 ~ 50194275 (-) True LOC118943861
XM_036960708.1 mRNA downstream 121125 50110420 ~ 50146309 (-) True LOC110503023
XM_021581405.1 mRNA upstream 27184 50296650 ~ 50297792 (-) True LOC110503026
XM_036960736.1 mRNA upstream 89817 50359283 ~ 50410527 (-) False LOC110502946
XM_036960735.1 mRNA upstream 91723 50361189 ~ 50400218 (-) True LOC110502946
XM_021581294.2 mRNA upstream 226357 50495823 ~ 50513513 (-) False LOC110502949
XM_021581292.2 mRNA upstream 226357 50495823 ~ 50513514 (-) False LOC110502949
TU2146264 other downstream 52930 50212050 ~ 50214504 (-) False LOC110503025
TU2146182 other downstream 214643 50051291 ~ 50052791 (-) True G1875984
TU2146049 other downstream 421106 49781612 ~ 49846328 (-) True LOC110503141
TU2145415 other downstream 960299 49304519 ~ 49307135 (-) False G1875310
TU2144859 other downstream 1530152 48729612 ~ 48737282 (-) True LOC110502911
TU2146732 other upstream 185855 50455321 ~ 50455709 (-) True G1876460
TU2146797 other upstream 496564 50766030 ~ 50770262 (-) False G1876522
TU2146796 other upstream 496630 50766096 ~ 50770262 (-) False G1876522
TU2146794 other upstream 496723 50766189 ~ 50770262 (-) False G1876522
TU2146795 other upstream 496723 50766189 ~ 50770317 (-) True G1876522

Expression Profile