RNA id: TU2146369


Basic Information

Item Value
RNA id TU2146369
length 1149
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id G1876144
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50323380 ~ 50334411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAAAAAGGGGATGTCATGACAATGTTTATCACTGACAGTatgtaggtagaggtacatatttgtcccctgacagtaggtaggtagaggtacatatttatcactgacagcaggtaggtagaggtacatatttatcactgacagtatgtaggtagaggtatatatttgtcactgacagtatgtaggtagaggtacatatttatcactgacagtatgtaggtagaggtatatatttgtcactgacagtatgtaggtagaggtacataTTTATCAATGACAGCAGGTAGGTAGAGGTATATATTTGTCACTGACAGTatgtaggtagaggtacataTTTATCAATGACAGCAGGTAGGTAGAGGTACATATTTATCattgacagtaggtaggtagaggtacatatttatcactgTCAGTAGGAAGGTAGAGGTACATATGTATCACTGACAGCAGGTAGGCAGaggtacatatttatcactgacagtaggtaggcagagtacatatcactgacagtaggtaggtagagtacatatcactgacagtaggtaggcagagtacatatcactgacagtaggtaggtagagtacatatcactgacagtaggtagatagggaagtatcactgacagtaggtagggagagtacatatcactgacagtaggtaggtagagtacatatcactgacagtaggtaggtagagtacatatcactgacagtaggtaggcagagtacatatcactgacagtaggtaggtagagtacatatcactgacagtaggtaggtagagtacatatcactgacagtaggtagagctacgtatttatcactgacagtaggtaggcagagtacatatcactgacagtaggtagaactacatatttatcactgacagtaggtaggcagagtacatatcactgacagtaggtaggtagaggtacatattatatcactgacagtaggtaggcagagtacatatcactgacagtaggtagagtTACATAtgtatcactgacagtaggtaggtaggtagaggtacatATTATATCACTGACGGTAGGTAGGTAGAGATGCATATTTATCaatgacagtaggtaggtaggtagagatacatatttatcaatgacagtaggtaggtaggtagagatacATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2146353 lncRNA downstream 7282 50315874 ~ 50316098 (-) True G1876132
TU2146320 lncRNA downstream 27835 50295103 ~ 50295545 (-) True G1876102
TU2146319 lncRNA downstream 28739 50294291 ~ 50294641 (-) True G1876101
TU2146317 lncRNA downstream 30021 50292681 ~ 50293359 (-) True G1876099
TU2146268 lncRNA downstream 46550 50275721 ~ 50276830 (-) True G1876050
TU2146406 lncRNA upstream 19716 50354127 ~ 50354474 (-) True G1876176
TU2146694 lncRNA upstream 29945 50364356 ~ 50366446 (-) False G1876425
TU2146695 lncRNA upstream 29945 50364356 ~ 50367289 (-) True G1876425
TU2146699 lncRNA upstream 60060 50394471 ~ 50394824 (-) True G1876429
TU2146716 lncRNA upstream 98790 50433201 ~ 50435068 (-) True G1876444
XM_021581405.1 mRNA downstream 25588 50296650 ~ 50297792 (-) True LOC110503026
XM_036960732.1 mRNA downstream 69884 50215068 ~ 50253496 (-) False LOC110503025
XM_036960734.1 mRNA downstream 69884 50215068 ~ 50253496 (-) False LOC110503025
XM_036960731.1 mRNA downstream 71999 50215068 ~ 50251381 (-) False LOC110503025
XR_005039168.1 mRNA downstream 129105 50191524 ~ 50194275 (-) True LOC118943861
XM_036960736.1 mRNA upstream 24872 50359283 ~ 50410527 (-) False LOC110502946
XM_036960735.1 mRNA upstream 26778 50361189 ~ 50400218 (-) True LOC110502946
XM_021581294.2 mRNA upstream 161412 50495823 ~ 50513513 (-) False LOC110502949
XM_021581292.2 mRNA upstream 161412 50495823 ~ 50513514 (-) False LOC110502949
XM_021581293.2 mRNA upstream 161412 50495823 ~ 50513514 (-) False LOC110502949
TU2146264 other downstream 108876 50212050 ~ 50214504 (-) False LOC110503025
TU2146182 other downstream 270589 50051291 ~ 50052791 (-) True G1875984
TU2146049 other downstream 477052 49781612 ~ 49846328 (-) True LOC110503141
TU2145415 other downstream 1016245 49304519 ~ 49307135 (-) False G1875310
TU2144859 other downstream 1586098 48729612 ~ 48737282 (-) True LOC110502911
TU2146732 other upstream 120910 50455321 ~ 50455709 (-) True G1876460
TU2146797 other upstream 431619 50766030 ~ 50770262 (-) False G1876522
TU2146796 other upstream 431685 50766096 ~ 50770262 (-) False G1876522
TU2146794 other upstream 431778 50766189 ~ 50770262 (-) False G1876522
TU2146795 other upstream 431778 50766189 ~ 50770317 (-) True G1876522

Expression Profile