RNA id: TU2146716


Basic Information

Item Value
RNA id TU2146716
length 717
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G1876444
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50433201 ~ 50435068 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctgtgaagaggtcaaccatctcagccagcagaagggatcccatcatcttgaagaggtaaaccatctcagccagcagaagggatcccatcatctgtgaaggggtaaaccatctcagccagcagaagggatcccatcatctgtgaagaggtaaaccatctcagccagcagaagggatcccatcatctgtgaagaggtcaaccatctcagccagcagaagggatcccatcatctgtgaagaggtcaaccatctcagccagcagaatggatcccatcatctgtgaagaggtaaaccatctcagccagcagaagggATCCCATCATCTTGAAGTGGTaaaccatctcagccagcagaagggatcccatcatctgtgaagaggtaaagcccatctcagccagcagaagggatcccatcatctgtgaagaggtaaaccatctcagccagcagaagggatcccatcatctgtgaagaggtaaaccatctcagccagcagaagggatcccatcatatgtgaagaggtaaaccatctcagccagcagaagggATTCCATCATCTGTGAAGCGGTAAACCATCTCAGCCAACAGAAGGGATCCCATCATCTGTGAAGGGGTaaaccatctcagccagcagaagggatcccatcatcttgaagaggtaaaccatctcagccagcagaagggatcccatcatctgtgaagaggtaaaccatctcagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2146699 lncRNA downstream 38377 50394471 ~ 50394824 (-) True G1876429
TU2146695 lncRNA downstream 65912 50364356 ~ 50367289 (-) True G1876425
TU2146694 lncRNA downstream 66755 50364356 ~ 50366446 (-) False G1876425
TU2146406 lncRNA downstream 78727 50354127 ~ 50354474 (-) True G1876176
TU2146369 lncRNA downstream 98790 50323380 ~ 50334411 (-) False G1876144
TU2146733 lncRNA upstream 20702 50455770 ~ 50456624 (-) True G1876461
TU2146692 lncRNA upstream 50778 50485846 ~ 50489522 (-) True G1876423
TU2146773 lncRNA upstream 114049 50549117 ~ 50551680 (-) True G1876501
TU2146792 lncRNA upstream 138450 50573518 ~ 50574006 (-) True G1876520
TU2146865 lncRNA upstream 284440 50719508 ~ 50719823 (-) True G1876585
XM_036960736.1 mRNA downstream 22674 50359283 ~ 50410527 (-) False LOC110502946
XM_036960735.1 mRNA downstream 32983 50361189 ~ 50400218 (-) True LOC110502946
XM_021581405.1 mRNA downstream 135409 50296650 ~ 50297792 (-) True LOC110503026
XM_036960732.1 mRNA downstream 179705 50215068 ~ 50253496 (-) False LOC110503025
XM_036960734.1 mRNA downstream 179705 50215068 ~ 50253496 (-) False LOC110503025
XM_021581294.2 mRNA upstream 60755 50495823 ~ 50513513 (-) False LOC110502949
XM_021581292.2 mRNA upstream 60755 50495823 ~ 50513514 (-) False LOC110502949
XM_021581293.2 mRNA upstream 60755 50495823 ~ 50513514 (-) False LOC110502949
XM_021581295.2 mRNA upstream 60755 50495823 ~ 50513514 (-) False LOC110502949
XM_021581296.2 mRNA upstream 60755 50495823 ~ 50513514 (-) False LOC110502949
TU2146264 other downstream 218697 50212050 ~ 50214504 (-) False LOC110503025
TU2146182 other downstream 380410 50051291 ~ 50052791 (-) True G1875984
TU2146049 other downstream 586873 49781612 ~ 49846328 (-) True LOC110503141
TU2145415 other downstream 1126066 49304519 ~ 49307135 (-) False G1875310
TU2144859 other downstream 1695919 48729612 ~ 48737282 (-) True LOC110502911
TU2146732 other upstream 20253 50455321 ~ 50455709 (-) True G1876460
TU2146797 other upstream 330962 50766030 ~ 50770262 (-) False G1876522
TU2146796 other upstream 331028 50766096 ~ 50770262 (-) False G1876522
TU2146794 other upstream 331121 50766189 ~ 50770262 (-) False G1876522
TU2146795 other upstream 331121 50766189 ~ 50770317 (-) True G1876522

Expression Profile