RNA id: TU2146733


Basic Information

Item Value
RNA id TU2146733
length 507
lncRNA type inter_gene
GC content 0.57
exon number 3
gene id G1876461
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50455770 ~ 50456624 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttctttttttcttttggataggtcagggtgtgactaggcgaacgtgacagaagatcccaccacaaaaaGACCAAGCAGCATGTTCAAGAGGAGTGGACATCCTGGGCCCGGGAGAAAGATGAGTGGAcgacatcctggacctgggaggaggtaatggcaggggacaagaccctgccatggaagcaggtggagaTAGCGCAGGAGGAACGGCGACGATACGAGGggacacggctagcacggCACACGGGTAGATTGGCAGAGTCAGGggttagacctgagccaactccccatgcttaccgtggggagcgtgtgactggtcagaCACTGTGTTAGTGATTCGCACGGTGTCTCCAATTCGcattcatagcccggtgcgctctattccagctcctcgcatttgccgggctagaatgggcatccagccaggacggatggtgctggctcagcgctcctggtctccagtacacctccttggaccaggatatcctgcgccggctctgcgcact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2146716 lncRNA downstream 20702 50433201 ~ 50435068 (-) True G1876444
TU2146699 lncRNA downstream 60946 50394471 ~ 50394824 (-) True G1876429
TU2146695 lncRNA downstream 88481 50364356 ~ 50367289 (-) True G1876425
TU2146694 lncRNA downstream 89324 50364356 ~ 50366446 (-) False G1876425
TU2146406 lncRNA downstream 101296 50354127 ~ 50354474 (-) True G1876176
TU2146692 lncRNA upstream 29222 50485846 ~ 50489522 (-) True G1876423
TU2146773 lncRNA upstream 92493 50549117 ~ 50551680 (-) True G1876501
TU2146792 lncRNA upstream 116894 50573518 ~ 50574006 (-) True G1876520
TU2146865 lncRNA upstream 262884 50719508 ~ 50719823 (-) True G1876585
TU2146875 lncRNA upstream 283553 50740177 ~ 50741577 (-) False G1876595
XM_036960736.1 mRNA downstream 45243 50359283 ~ 50410527 (-) False LOC110502946
XM_036960735.1 mRNA downstream 55552 50361189 ~ 50400218 (-) True LOC110502946
XM_021581405.1 mRNA downstream 157978 50296650 ~ 50297792 (-) True LOC110503026
XM_036960732.1 mRNA downstream 202274 50215068 ~ 50253496 (-) False LOC110503025
XM_036960734.1 mRNA downstream 202274 50215068 ~ 50253496 (-) False LOC110503025
XM_021581294.2 mRNA upstream 39199 50495823 ~ 50513513 (-) False LOC110502949
XM_021581292.2 mRNA upstream 39199 50495823 ~ 50513514 (-) False LOC110502949
XM_021581293.2 mRNA upstream 39199 50495823 ~ 50513514 (-) False LOC110502949
XM_021581295.2 mRNA upstream 39199 50495823 ~ 50513514 (-) False LOC110502949
XM_021581296.2 mRNA upstream 39199 50495823 ~ 50513514 (-) False LOC110502949
TU2146732 other downstream 61 50455321 ~ 50455709 (-) True G1876460
TU2146264 other downstream 241266 50212050 ~ 50214504 (-) False LOC110503025
TU2146182 other downstream 402979 50051291 ~ 50052791 (-) True G1875984
TU2146049 other downstream 609442 49781612 ~ 49846328 (-) True LOC110503141
TU2145415 other downstream 1148635 49304519 ~ 49307135 (-) False G1875310
TU2146797 other upstream 309406 50766030 ~ 50770262 (-) False G1876522
TU2146796 other upstream 309472 50766096 ~ 50770262 (-) False G1876522
TU2146794 other upstream 309565 50766189 ~ 50770262 (-) False G1876522
TU2146795 other upstream 309565 50766189 ~ 50770317 (-) True G1876522
TU2148254 other upstream 1301538 51758162 ~ 51765341 (-) True G1877873

Expression Profile