RNA id: TU2146795



Basic Information


Item Value
RNA id TU2146795
length 481
RNA type TUCP
GC content 0.45
exon number 5
gene id G1876522
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 50766030 ~ 50770317 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTTACATTTGTCCTCCATGGTATGCCGTAGCTTGAGCTATAAATTTTACGTCAGCGGAAGTTCCGTCCTTTTCGTCCCCTCTCTTGCAGGCTGTGCTTCAGTCCGCTGACACGGCAAGATGCCACGAAAAATCGAAGAAATTAAAGATTTCTTGCTTACAGCAAGGAGGAAGGATGCCAAGTCCGTAAAGATCAAGAAGAACAAGGACAATGTCAAGTTCAAGGTGCGTTGCAGCCGGTACCTGTACACCCTCGTCATCACAGACAAGGAGAAGGCAGAGAAGCTGAAACAGTCCCTGCCCCCAGGTCTGGCTGTGAAGGAGCTCAAGTAGAGGACTATCTTCGTGTACAGTAAATTGTAATAAAAAGAGAAACCATTTGTCTTTGTCATGCCTGTTATGTTGTTCCACTACAGTAAATGATCTATATTCATGTGTAACCTGCTTAGTGGCTCTATTTTGGAAGAAGGCAAAAACGAATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2146875 lncRNA downstream 24612 50740177 ~ 50741577 (-) False G1876595
TU2146879 lncRNA downstream 24612 50740177 ~ 50741577 (-) True G1876595
TU2146865 lncRNA downstream 46366 50719508 ~ 50719823 (-) True G1876585
TU2146792 lncRNA downstream 192183 50573518 ~ 50574006 (-) True G1876520
TU2146773 lncRNA downstream 214509 50549117 ~ 50551680 (-) True G1876501
TU2146925 lncRNA upstream 34883 50805200 ~ 50805407 (-) True G1876639
TU2146932 lncRNA upstream 37719 50808036 ~ 50808262 (-) True G1876646
TU2146950 lncRNA upstream 51626 50821943 ~ 50822155 (-) True G1876664
TU2147155 lncRNA upstream 183491 50953808 ~ 50956839 (-) True G1876856
TU2147216 lncRNA upstream 244723 51015040 ~ 51015241 (-) True G1876916
XM_036960749.1 mRNA downstream 155758 50594746 ~ 50610431 (-) True dnai2b
XM_036960748.1 mRNA downstream 155759 50594746 ~ 50610430 (-) False dnai2b
XM_036960746.1 mRNA downstream 172789 50520914 ~ 50593400 (-) False LOC110503027
XM_036960747.1 mRNA downstream 172789 50520914 ~ 50593400 (-) True LOC110503027
XM_036960744.1 mRNA downstream 252675 50495823 ~ 50513514 (-) True LOC110502949
XM_021581303.2 mRNA upstream 1032229 51802546 ~ 51813619 (-) True LOC110502956
LOC110503030 mRNA upstream 1058226 51828543 ~ 51842849 (-) True LOC110503030
XM_036959912.1 mRNA upstream 1175121 51945438 ~ 51953168 (-) True LOC118943832
XM_021581304.2 mRNA upstream 1501088 52271405 ~ 52312301 (-) False LOC110502957
trnag-ccc-6 mRNA upstream 1996532 52766849 ~ 52766919 (-) True trnag-ccc-6
TU2146732 other downstream 310480 50455321 ~ 50455709 (-) True G1876460
TU2146264 other downstream 551685 50212050 ~ 50214504 (-) False LOC110503025
TU2146182 other downstream 713398 50051291 ~ 50052791 (-) True G1875984
TU2146049 other downstream 919861 49781612 ~ 49846328 (-) True LOC110503141
TU2145415 other downstream 1459054 49304519 ~ 49307135 (-) False G1875310
TU2148254 other upstream 987845 51758162 ~ 51765341 (-) True G1877873
TU2148263 other upstream 1022301 51792618 ~ 51792968 (-) True G1877882
TU2148370 other upstream 1144630 51914947 ~ 51915249 (-) True G1877986
TU2148398 other upstream 1164407 51934724 ~ 51935044 (-) True G1878014
TU2148499 other upstream 1266279 52036596 ~ 52037750 (-) True G1878101

Expression Profile