RNA id: TU2149919


Basic Information

Item Value
RNA id TU2149919
length 666
RNA type TUCP
GC content 0.51
exon number 2
gene id G1879406
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53163242 ~ 53164351 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtagGGATGTATTGGCTTGGTGTCAgctggttggagagccctggtagGGATGTATTGGCTTGGTGCCAGCTGTGCTCTTGTTGTTCTGTATACTATGTCACTGATACAATCTTGAGCTAAAGTTGTATCTGTGACCAGTTACTTGTGATCCAACTCAAATGAGTTGACATGAATAAGCTTTGCTGTGTGTTAGTCATTTCAACGTGCCAACGCAATTCCAtaagctctctctgtctgtctcccttctctttctgtctgtctcccccctttctgtctgtctccccctctgtctgtctccttctctctctgtctgtctcccccctctgtctgcttccccctttctgtctgtctactctctctctgtctccccctctatctgtctgtctcccttctctctctgtctgtcctcctcctctgtctgcttccccctctctgtctgtcttctctctctctctctgtctttctccctctctgtctgtctcccttctctctgtctgtctcccgcaCCTTTGTCTGTCGTCTCCCCCCTCTgtatgtctccccctctctgtctgtctcccctctctctctgtctgtctccccctgtgtctgcttccccctgtctgtctgtctctctctctctctgtctgcctcaccctctatctgtctttctcccttctctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2149917 lncRNA downstream 314 53162675 ~ 53162928 (-) True G1879405
TU2149916 lncRNA downstream 818 53162159 ~ 53162424 (-) True G1879404
TU2149915 lncRNA downstream 1259 53161325 ~ 53161983 (-) True G1879403
TU2149914 lncRNA downstream 1984 53161006 ~ 53161258 (-) True G1879402
TU2149905 lncRNA downstream 21909 53141122 ~ 53141333 (-) True G1879397
TU2149922 lncRNA upstream 3070 53167421 ~ 53167691 (-) True G1879409
TU2149923 lncRNA upstream 3436 53167787 ~ 53168020 (-) True G1879410
TU2149927 lncRNA upstream 10451 53174802 ~ 53175014 (-) True G1879414
TU2149928 lncRNA upstream 10864 53175215 ~ 53175439 (-) True G1879415
TU2149938 lncRNA upstream 22797 53187148 ~ 53187368 (-) True G1879422
XM_021581307.2 mRNA downstream 150254 52991464 ~ 53012988 (-) True LOC110502960
XR_005039252.1 mRNA downstream 156207 53004821 ~ 53007035 (-) False LOC118943905
XM_036960785.1 mRNA downstream 302588 52825493 ~ 52860654 (-) True LOC110503033
XM_036960786.1 mRNA downstream 347236 52775151 ~ 52816006 (-) False LOC110503032
trnag-ccc-6 mRNA downstream 396323 52766849 ~ 52766919 (-) True trnag-ccc-6
XR_005039253.1 mRNA upstream 97238 53261589 ~ 53391375 (-) True LOC118943906
XM_036959913.1 mRNA upstream 240868 53405219 ~ 53448095 (-) True LOC118943833
XM_021581308.2 mRNA upstream 341742 53506093 ~ 53513907 (-) False LOC110502962
XM_021581309.2 mRNA upstream 341742 53506093 ~ 53514592 (-) True LOC110502962
XR_002470403.2 mRNA upstream 353632 53517983 ~ 53538653 (-) False LOC110502963
TU2149213 other downstream 519733 52643088 ~ 52643509 (-) True G1878770
TU2148956 other downstream 847464 52297228 ~ 52315778 (-) True LOC110502957
TU2148730 other downstream 955615 52207428 ~ 52207627 (-) True G1878324
TU2148499 other downstream 1125492 52036596 ~ 52037750 (-) True G1878101
TU2148398 other downstream 1228198 51934724 ~ 51935044 (-) True G1878014
TU2151379 other upstream 903436 54067787 ~ 54073949 (-) True LOC110503036
TU2151535 other upstream 1080431 54244782 ~ 54246686 (-) False G1880780
TU2152307 other upstream 1838415 55002766 ~ 55003624 (-) True G1881414
TU2154312 other upstream 3441655 56606006 ~ 56610640 (-) False G1883219
TU2154381 other upstream 3479656 56644007 ~ 56709888 (-) False G1883244

Expression Profile