RNA id: TU2149943


Basic Information

Item Value
RNA id TU2149943
length 540
lncRNA type intronic
GC content 0.49
exon number 1
gene id G1879426
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53195733 ~ 53196272 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGcagccaagcgttcatagcgacgtcgctttttgatcctttgATGTTGgttcttcctatcattgtgaagcagaattcaccaagtgttggattgttcacccactaatagggagctgggtttagaccatcgtgagacaggttagttttaccctactgatgatgtgttgtaggaatagtaatcctgctcagtatgAGAGGAACcacaggttcagacatttggtgtatgtgcttggctgaggagccaatggtgtgAAGctactgaacgcctctaagtcagaatccccacTAAACGTAATGATATCGTAGcaccgtggagcttcggttggactgggatagcctgcctcttttggcaggtgagtagggCCATttgtgacagggtcggggtgtggccgaatgagttgccgcccctctcctgatgcgcaccacatgtttgtggagaacctggttttaaatcactcgtagacgacctgattctgggtcagggtttcgtgcgtagcagagcagctcactcgttGCGATCTATTGAAaatcagccctcgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2149939 lncRNA downstream 7316 53188000 ~ 53188417 (-) True G1879423
TU2149938 lncRNA downstream 8365 53187148 ~ 53187368 (-) True G1879422
TU2149928 lncRNA downstream 20294 53175215 ~ 53175439 (-) True G1879415
TU2149927 lncRNA downstream 20719 53174802 ~ 53175014 (-) True G1879414
TU2149923 lncRNA downstream 27713 53167787 ~ 53168020 (-) True G1879410
TU2149945 lncRNA upstream 2895 53199167 ~ 53199411 (-) True G1879427
TU2149949 lncRNA upstream 9115 53205387 ~ 53205630 (-) True G1879431
TU2149952 lncRNA upstream 12442 53208714 ~ 53208991 (-) True G1879434
TU2149961 lncRNA upstream 19622 53215894 ~ 53216121 (-) True G1879443
TU2149962 lncRNA upstream 20285 53216557 ~ 53217012 (-) True G1879444
XM_021581307.2 mRNA downstream 182745 52991464 ~ 53012988 (-) True LOC110502960
XR_005039252.1 mRNA downstream 188698 53004821 ~ 53007035 (-) False LOC118943905
XM_036960785.1 mRNA downstream 335079 52825493 ~ 52860654 (-) True LOC110503033
XM_036960786.1 mRNA downstream 379727 52775151 ~ 52816006 (-) False LOC110503032
trnag-ccc-6 mRNA downstream 428814 52766849 ~ 52766919 (-) True trnag-ccc-6
XR_005039253.1 mRNA upstream 65317 53261589 ~ 53391375 (-) True LOC118943906
XM_036959913.1 mRNA upstream 208947 53405219 ~ 53448095 (-) True LOC118943833
XM_021581308.2 mRNA upstream 309821 53506093 ~ 53513907 (-) False LOC110502962
XM_021581309.2 mRNA upstream 309821 53506093 ~ 53514592 (-) True LOC110502962
XR_002470403.2 mRNA upstream 321711 53517983 ~ 53538653 (-) False LOC110502963
TU2149919 other downstream 31382 53163242 ~ 53164351 (-) True G1879406
TU2149213 other downstream 552224 52643088 ~ 52643509 (-) True G1878770
TU2148956 other downstream 879955 52297228 ~ 52315778 (-) True LOC110502957
TU2148730 other downstream 988106 52207428 ~ 52207627 (-) True G1878324
TU2148499 other downstream 1157983 52036596 ~ 52037750 (-) True G1878101
TU2151379 other upstream 871515 54067787 ~ 54073949 (-) True LOC110503036
TU2151535 other upstream 1048510 54244782 ~ 54246686 (-) False G1880780
TU2152307 other upstream 1806494 55002766 ~ 55003624 (-) True G1881414
TU2154312 other upstream 3409734 56606006 ~ 56610640 (-) False G1883219
TU2154381 other upstream 3447735 56644007 ~ 56709888 (-) False G1883244

Expression Profile