RNA id: TU2149945


Basic Information

Item Value
RNA id TU2149945
length 245
lncRNA type intronic
GC content 0.38
exon number 1
gene id G1879427
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53199167 ~ 53199411 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctgatgccattaaaaggtaatttaccaccttcacaagtgcagtctcagtgctatgatagggtctaaaaccagactgaagcatttcgaaTACATTGTTTGAGAGGAACggaagattcgatatagaccgatagttttttatattttctaggtcaaggtttggctttttcaagaaagGCTTTactactgccacttttagtgagtttggtacacatctggtggatagagagcaGTTTATTATGTTcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2149943 lncRNA downstream 2895 53195733 ~ 53196272 (-) True G1879426
TU2149942 lncRNA downstream 3225 53195733 ~ 53195942 (-) False G1879426
TU2149939 lncRNA downstream 10750 53188000 ~ 53188417 (-) True G1879423
TU2149938 lncRNA downstream 11799 53187148 ~ 53187368 (-) True G1879422
TU2149928 lncRNA downstream 23728 53175215 ~ 53175439 (-) True G1879415
TU2149949 lncRNA upstream 5976 53205387 ~ 53205630 (-) True G1879431
TU2149952 lncRNA upstream 9303 53208714 ~ 53208991 (-) True G1879434
TU2149961 lncRNA upstream 16483 53215894 ~ 53216121 (-) True G1879443
TU2149962 lncRNA upstream 17146 53216557 ~ 53217012 (-) True G1879444
TU2149965 lncRNA upstream 20794 53220205 ~ 53220698 (-) True G1879447
XM_021581307.2 mRNA downstream 186179 52991464 ~ 53012988 (-) True LOC110502960
XR_005039252.1 mRNA downstream 192132 53004821 ~ 53007035 (-) False LOC118943905
XM_036960785.1 mRNA downstream 338513 52825493 ~ 52860654 (-) True LOC110503033
XM_036960786.1 mRNA downstream 383161 52775151 ~ 52816006 (-) False LOC110503032
trnag-ccc-6 mRNA downstream 432248 52766849 ~ 52766919 (-) True trnag-ccc-6
XR_005039253.1 mRNA upstream 62178 53261589 ~ 53391375 (-) True LOC118943906
XM_036959913.1 mRNA upstream 205808 53405219 ~ 53448095 (-) True LOC118943833
XM_021581308.2 mRNA upstream 306682 53506093 ~ 53513907 (-) False LOC110502962
XM_021581309.2 mRNA upstream 306682 53506093 ~ 53514592 (-) True LOC110502962
XR_002470403.2 mRNA upstream 318572 53517983 ~ 53538653 (-) False LOC110502963
TU2149919 other downstream 34816 53163242 ~ 53164351 (-) True G1879406
TU2149213 other downstream 555658 52643088 ~ 52643509 (-) True G1878770
TU2148956 other downstream 883389 52297228 ~ 52315778 (-) True LOC110502957
TU2148730 other downstream 991540 52207428 ~ 52207627 (-) True G1878324
TU2148499 other downstream 1161417 52036596 ~ 52037750 (-) True G1878101
TU2151379 other upstream 868376 54067787 ~ 54073949 (-) True LOC110503036
TU2151535 other upstream 1045371 54244782 ~ 54246686 (-) False G1880780
TU2152307 other upstream 1803355 55002766 ~ 55003624 (-) True G1881414
TU2154312 other upstream 3406595 56606006 ~ 56610640 (-) False G1883219
TU2154381 other upstream 3444596 56644007 ~ 56709888 (-) False G1883244

Expression Profile