RNA id: TU2149952


Basic Information

Item Value
RNA id TU2149952
length 278
lncRNA type intronic
GC content 0.33
exon number 1
gene id G1879434
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53208714 ~ 53208991 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cattcatatatctttatgtacatattctttatccctttacacttgtgtgtataaggtagtagttttggaattgttagttagattactcgttggttattactgcatcggaactagaagcacaagcatttcgctacactcgcattaacatctgctaaccatgtgtatgtgacaaatacatttgatttgattggatttgatttcaGATGAGGCACACACATATTGAGTTTGACATGATGAAAAAATAATCCTCCTATTTCTTGTGGAAATTatatgttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2149949 lncRNA downstream 3084 53205387 ~ 53205630 (-) True G1879431
TU2149945 lncRNA downstream 9303 53199167 ~ 53199411 (-) True G1879427
TU2149943 lncRNA downstream 12442 53195733 ~ 53196272 (-) True G1879426
TU2149942 lncRNA downstream 12772 53195733 ~ 53195942 (-) False G1879426
TU2149939 lncRNA downstream 20297 53188000 ~ 53188417 (-) True G1879423
TU2149961 lncRNA upstream 6903 53215894 ~ 53216121 (-) True G1879443
TU2149962 lncRNA upstream 7566 53216557 ~ 53217012 (-) True G1879444
TU2149965 lncRNA upstream 11214 53220205 ~ 53220698 (-) True G1879447
TU2149966 lncRNA upstream 12069 53221060 ~ 53221287 (-) True G1879448
TU2149971 lncRNA upstream 21514 53230505 ~ 53230707 (-) True G1879453
XM_021581307.2 mRNA downstream 195726 52991464 ~ 53012988 (-) True LOC110502960
XR_005039252.1 mRNA downstream 201679 53004821 ~ 53007035 (-) False LOC118943905
XM_036960785.1 mRNA downstream 348060 52825493 ~ 52860654 (-) True LOC110503033
XM_036960786.1 mRNA downstream 392708 52775151 ~ 52816006 (-) False LOC110503032
trnag-ccc-6 mRNA downstream 441795 52766849 ~ 52766919 (-) True trnag-ccc-6
XR_005039253.1 mRNA upstream 52598 53261589 ~ 53391375 (-) True LOC118943906
XM_036959913.1 mRNA upstream 196228 53405219 ~ 53448095 (-) True LOC118943833
XM_021581308.2 mRNA upstream 297102 53506093 ~ 53513907 (-) False LOC110502962
XM_021581309.2 mRNA upstream 297102 53506093 ~ 53514592 (-) True LOC110502962
XR_002470403.2 mRNA upstream 308992 53517983 ~ 53538653 (-) False LOC110502963
TU2149919 other downstream 44363 53163242 ~ 53164351 (-) True G1879406
TU2149213 other downstream 565205 52643088 ~ 52643509 (-) True G1878770
TU2148956 other downstream 892936 52297228 ~ 52315778 (-) True LOC110502957
TU2148730 other downstream 1001087 52207428 ~ 52207627 (-) True G1878324
TU2148499 other downstream 1170964 52036596 ~ 52037750 (-) True G1878101
TU2151379 other upstream 858796 54067787 ~ 54073949 (-) True LOC110503036
TU2151535 other upstream 1035791 54244782 ~ 54246686 (-) False G1880780
TU2152307 other upstream 1793775 55002766 ~ 55003624 (-) True G1881414
TU2154312 other upstream 3397015 56606006 ~ 56610640 (-) False G1883219
TU2154381 other upstream 3435016 56644007 ~ 56709888 (-) False G1883244

Expression Profile