RNA id: TU2149965


Basic Information

Item Value
RNA id TU2149965
length 494
lncRNA type intronic
GC content 0.43
exon number 1
gene id G1879447
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53220205 ~ 53220698 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgggtatcggcctaattctgctctgcatgcattatttggtgttctacgttgtacacagaggatatttttgcagaattctgcgtgcagagtctcaatttggtgtttgtcccattttgtgaagtcttggttggtgagcggaccccagacctcacaaccataaagggcaatgggctctatgactgattcaagtatttttagccaaatcctaattggtatgttgaaatttttgttccttttgatggcatagaatgcccttcttgccttgtctctcagatcgttcacagctttgtggaagttacctgtggcgctgatgtttaggccaaggtatgtatagttttttgtgtgctctagggcaacagtgtctaaatggaatttgtatttgtggtcctggtgactggaccttttttggaacaccattattttggtctaactgagatttactgtcaggacccatgtctgacagaatctgtgcataagatctaggtgctgctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2149962 lncRNA downstream 3193 53216557 ~ 53217012 (-) True G1879444
TU2149961 lncRNA downstream 4084 53215894 ~ 53216121 (-) True G1879443
TU2149952 lncRNA downstream 11214 53208714 ~ 53208991 (-) True G1879434
TU2149949 lncRNA downstream 14575 53205387 ~ 53205630 (-) True G1879431
TU2149945 lncRNA downstream 20794 53199167 ~ 53199411 (-) True G1879427
TU2149966 lncRNA upstream 362 53221060 ~ 53221287 (-) True G1879448
TU2149971 lncRNA upstream 9807 53230505 ~ 53230707 (-) True G1879453
TU2150080 lncRNA upstream 140689 53361387 ~ 53361626 (-) True G1879561
TU2150106 lncRNA upstream 159197 53379895 ~ 53380149 (-) True G1879587
TU2150108 lncRNA upstream 160320 53381018 ~ 53381230 (-) True G1879589
XM_021581307.2 mRNA downstream 207217 52991464 ~ 53012988 (-) True LOC110502960
XR_005039252.1 mRNA downstream 213170 53004821 ~ 53007035 (-) False LOC118943905
XM_036960785.1 mRNA downstream 359551 52825493 ~ 52860654 (-) True LOC110503033
XM_036960786.1 mRNA downstream 404199 52775151 ~ 52816006 (-) False LOC110503032
trnag-ccc-6 mRNA downstream 453286 52766849 ~ 52766919 (-) True trnag-ccc-6
XR_005039253.1 mRNA upstream 40891 53261589 ~ 53391375 (-) True LOC118943906
XM_036959913.1 mRNA upstream 184521 53405219 ~ 53448095 (-) True LOC118943833
XM_021581308.2 mRNA upstream 285395 53506093 ~ 53513907 (-) False LOC110502962
XM_021581309.2 mRNA upstream 285395 53506093 ~ 53514592 (-) True LOC110502962
XR_002470403.2 mRNA upstream 297285 53517983 ~ 53538653 (-) False LOC110502963
TU2149919 other downstream 55854 53163242 ~ 53164351 (-) True G1879406
TU2149213 other downstream 576696 52643088 ~ 52643509 (-) True G1878770
TU2148956 other downstream 904427 52297228 ~ 52315778 (-) True LOC110502957
TU2148730 other downstream 1012578 52207428 ~ 52207627 (-) True G1878324
TU2148499 other downstream 1182455 52036596 ~ 52037750 (-) True G1878101
TU2151379 other upstream 847089 54067787 ~ 54073949 (-) True LOC110503036
TU2151535 other upstream 1024084 54244782 ~ 54246686 (-) False G1880780
TU2152307 other upstream 1782068 55002766 ~ 55003624 (-) True G1881414
TU2154312 other upstream 3385308 56606006 ~ 56610640 (-) False G1883219
TU2154381 other upstream 3423309 56644007 ~ 56709888 (-) False G1883244

Expression Profile