RNA id: TU2151228


Basic Information

Item Value
RNA id TU2151228
length 983
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1880538
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53845948 ~ 53846930 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catcttcatgagggAGTTACCTGGAaggcatttaaattaacaggtgtaccttcttaaaaggTTATTTGTGTAATTtccttccttcttaatgtgtttgagccaatcagttgtgttgtgactaggtaggatggctatacagaagatagccctatttggtaaaagaccaagtccatattatgtcaaaaacagctaaaataagcaaagagaaacgacagtccatcattactttaacacgtgaaggtcagtcaatggtttcttcaagtgcaattgcaaaaaccatcaagcgctatgatgaaactggctctcatgaggaccaccacaggataggaagacccagaattacctctgctgcagaggataatttcattagagttaccagcctcagaaattgcaacccaaataaatgcttcccaGAATTCAAGTAAGACATCAACATCATGTGGTCAGAGGAgaatgcgtgaatcaggcctacatggtcaaattgctgcaaagaaaccactactaaaggacaccaataagaagagacttgttttggccaagaaacacgagcaatggacatttgactggtggaaatctgtcctttggtctgagtccaaatttgagatttttggttccaaccgctgtgtctttgtgtgacaccgtgtaggtgaatggatgatttccgcatgtgtggttcccaccgtgaagaattgaggaggaggtgtgatggtgctttgctggtgacactgccagggatttatttagaattcaaggcacacttaaccagcatggctaccacagcattctgcagcaatatgccatcccatgtGGTGTGTGcttcgtgggactatcatttgtttttcaacaggacaatgacccaacacacctccaggctgtgtaagggctatttgaccaggaaggagagtgatggaatgctgcatcagatgacctggcctccacaatgacCTGActtcaacctaattgagatggtttgggatgagttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2151226 lncRNA downstream 178 53844291 ~ 53845770 (-) True G1880536
TU2151210 lncRNA downstream 5052 53839525 ~ 53840896 (-) False G1880528
TU2151208 lncRNA downstream 5272 53839525 ~ 53840676 (-) False G1880528
TU2151209 lncRNA downstream 5272 53839525 ~ 53840676 (-) False G1880528
TU2151211 lncRNA downstream 5272 53839525 ~ 53840676 (-) False G1880528
TU2151250 lncRNA upstream 33475 53880405 ~ 53880688 (-) True G1880549
TU2151259 lncRNA upstream 41909 53888839 ~ 53889186 (-) True G1880556
TU2151260 lncRNA upstream 44428 53891358 ~ 53891626 (-) True G1880557
TU2151264 lncRNA upstream 52926 53899856 ~ 53900116 (-) True G1880561
TU2151267 lncRNA upstream 55534 53902464 ~ 53977108 (-) True G1880563
XM_021581320.2 mRNA downstream 61866 53779267 ~ 53784082 (-) True pdcd2
XM_021581315.2 mRNA downstream 111328 53716988 ~ 53734620 (-) True LOC110502966
XM_021581312.2 mRNA downstream 274467 53565101 ~ 53571481 (-) False LOC110502964
XM_021581313.2 mRNA downstream 274636 53565695 ~ 53571312 (-) True LOC110502964
XM_021581311.2 mRNA downstream 283914 53517983 ~ 53562034 (-) True LOC110502963
XM_021581326.2 mRNA upstream 1697 53848627 ~ 53850948 (-) False ccsapb
XM_021581325.2 mRNA upstream 1697 53848627 ~ 53851652 (-) True ccsapb
XM_021581324.2 mRNA upstream 4989 53851919 ~ 53855036 (-) True LOC100135949
LOC110502973 mRNA upstream 11789 53858719 ~ 53864562 (-) True LOC110502973
XM_036960793.1 mRNA upstream 192088 54039018 ~ 54073953 (-) False LOC110503036
TU2149919 other downstream 681597 53163242 ~ 53164351 (-) True G1879406
TU2149213 other downstream 1202439 52643088 ~ 52643509 (-) True G1878770
TU2148956 other downstream 1530170 52297228 ~ 52315778 (-) True LOC110502957
TU2148730 other downstream 1638321 52207428 ~ 52207627 (-) True G1878324
TU2148499 other downstream 1808198 52036596 ~ 52037750 (-) True G1878101
TU2151379 other upstream 220857 54067787 ~ 54073949 (-) True LOC110503036
TU2151535 other upstream 397852 54244782 ~ 54246686 (-) False G1880780
TU2152307 other upstream 1155836 55002766 ~ 55003624 (-) True G1881414
TU2154312 other upstream 2759076 56606006 ~ 56610640 (-) False G1883219
TU2154381 other upstream 2797077 56644007 ~ 56709888 (-) False G1883244

Expression Profile