RNA id: TU2151264


Basic Information

Item Value
RNA id TU2151264
length 261
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1880561
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 53899856 ~ 53900116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtcagtttcatcacagtgcttgatggtttttacgactgcacttgaagaaactttcaaagttcctgaagtgttctgcattgactgaccttcatgtcttaaaataatgatggacagtaatttctctttgcttatttgagctgttcctgccataatatggacttgtcaTTTTACCAAATACGACTATCtcctgtataccaaccctaccttgtcacaacacaactgattggctcaagcgcattaagaaggaaagaaattccact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2151260 lncRNA downstream 8230 53891358 ~ 53891626 (-) True G1880557
TU2151259 lncRNA downstream 10670 53888839 ~ 53889186 (-) True G1880556
TU2151250 lncRNA downstream 19168 53880405 ~ 53880688 (-) True G1880549
TU2151228 lncRNA downstream 52926 53845948 ~ 53846930 (-) True G1880538
TU2151226 lncRNA downstream 54086 53844291 ~ 53845770 (-) True G1880536
TU2151267 lncRNA upstream 2348 53902464 ~ 53977108 (-) True G1880563
TU2151360 lncRNA upstream 114008 54014124 ~ 54014553 (-) True G1880651
TU2151332 lncRNA upstream 125763 54025879 ~ 54027582 (-) False G1880628
TU2151334 lncRNA upstream 125763 54025879 ~ 54027582 (-) False G1880628
TU2151335 lncRNA upstream 125763 54025879 ~ 54027582 (-) True G1880628
LOC110502973 mRNA downstream 35294 53858719 ~ 53864562 (-) True LOC110502973
XM_021581324.2 mRNA downstream 44820 53851919 ~ 53855036 (-) True LOC100135949
XM_021581325.2 mRNA downstream 48204 53848627 ~ 53851652 (-) True ccsapb
XM_021581326.2 mRNA downstream 48908 53848627 ~ 53850948 (-) False ccsapb
XM_021581320.2 mRNA downstream 115774 53779267 ~ 53784082 (-) True pdcd2
XM_036960793.1 mRNA upstream 138902 54039018 ~ 54073953 (-) False LOC110503036
LOC110503071 mRNA upstream 313141 54213257 ~ 54217097 (-) True LOC110503071
XM_036960801.1 mRNA upstream 352765 54252881 ~ 54259094 (-) False LOC110502978
XM_021581332.2 mRNA upstream 352765 54252881 ~ 54282773 (-) True LOC110502978
XM_021581339.2 mRNA upstream 479301 54379417 ~ 54423946 (-) False LOC110502980
TU2149919 other downstream 735505 53163242 ~ 53164351 (-) True G1879406
TU2149213 other downstream 1256347 52643088 ~ 52643509 (-) True G1878770
TU2148956 other downstream 1584078 52297228 ~ 52315778 (-) True LOC110502957
TU2148730 other downstream 1692229 52207428 ~ 52207627 (-) True G1878324
TU2148499 other downstream 1862106 52036596 ~ 52037750 (-) True G1878101
TU2151379 other upstream 167671 54067787 ~ 54073949 (-) True LOC110503036
TU2151535 other upstream 344666 54244782 ~ 54246686 (-) False G1880780
TU2152307 other upstream 1102650 55002766 ~ 55003624 (-) True G1881414
TU2154312 other upstream 2705890 56606006 ~ 56610640 (-) False G1883219
TU2154381 other upstream 2743891 56644007 ~ 56709888 (-) False G1883244

Expression Profile