RNA id: TCONS_00053218


Basic Information

Item Value
RNA id TCONS_00053218
length 1506
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id XLOC_026946
representative True

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 398517 ~ 402485 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATCGTCTGAAAAGCTCTCTGGATCTTAACTCCACCCTAATTCTCCTGGGGATCGAACCCATGACCTTCCTATCTTGgtaaatCCAGAAGAACTCTAATTTCATCTTCAGTGGGACTCGAACCTGAAGCTTTTGGATTGTGGGCTGACTCacagaccactgagccaccaagacTACAGTACACGCATATGGTTTTGTTAATTGTGTCTGTTTTATTCCAGGTTAAACGTCATCTAAAGAAGGAATCAAACTCTGCAACTCTGTCCATGAGCTGATGATCAGACCACTGCGCCACTGATGTGCTCACACTAGCTATTAATGCCTAGTATTTGAATAACCCCCGCCGCTGCGCTGCGCTGCTCGCTCTccgccactagatggcagtattACACCACAGATCACCGCTTCTCCTCAGCATTAAACGGTCAAACCTCATCTGAAGGAGAAATCAAAGATCACAGGCTGATGTGCTCACACTTTCTGCTGTTTTGGGTCATCCTGCCTTTTCTATTCCAGGTAAACATCATGTAAAGGAGGAAGCAAAGCTGTGAATTCCCCAATCATGAGCTGCTGTTCACAGCACTGAGCTGCTGATGCTCTCTTGCATCATGTTAAACCTTATCTGCTTCATATCTCAGGCTGATGTTCAGACCACGGACACACTCAACTGATTTTTGCTAATTTTGTCTGTTTATTCCAGTTAAACCAGTAGAAGGTCATCTACAGAGAGACTCAAACCTGCATCTGTCATATCAGGGCTCTGCTGTTGTCCACTGATGCTTGCAGAGCCGTGAGCCGCTGCTTTGGTTTTGGGTAGAGCTTTTACAAATGTTGCCTGAGCTCAAAACCTGAACCCTCGCTCTCCTCCTGTTCTGTTAAACTCCCAATTCTCAGAAAGTCTCATGGGCAGATGACTCTCCAGAACTCCTCTGTCCGCTTTTGGGTTGGTTTGCATATAGTTTTTAATTATTCAGAAGAAATCAGACTGATTTTCCATTGGTCGTGAACTGCTGCTCAGTTTCATTGGTTTGCATCTACAGCTCATTTCTCCACAGCTCATTGTTGTTTATTAGCCGgtttatgatttattaaaaattagtaaATCATTGTGAGCTCAGAGATGGAATTTGTCGatttaaaatgtatgattttcaCTATTTTTAGcaggtttgtttttgtaaatactCGGCCGCTGCGCTTCTCTCTGTCCGCCACTAGATGGCAGCGCTTTACCACAAATCACCGCTTCTCCTCAGCGTTGAATAGTACCTCAGAGCAGCACGTGGATAATAGAGCTATAAATATTGCATAAGtaataatatgtacctttaaataTTGCCAAAATAGTGAGCAAACAATTTCGCATgtgatatttaaattaatttaccgAAGCTTTTTTAATACAGTAAACATGTAATTAAATAACACGGTCTAATTTTAAATGTTTGGTAAAAATTAACACCATTTTCAAACATTCTGCCAAACAAAATGTGCAGATCTCTGTAGA

Function

GO:

id name namespace
GO:0033036 macromolecule localization biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053211 lncRNA upstream 37571 357810 ~ 362805 (+) False XLOC_026943
TCONS_00057491 lncRNA upstream 153407 246350 ~ 246969 (+) True XLOC_026937
TCONS_00057104 lncRNA upstream 323705 74199 ~ 76671 (+) True XLOC_026934
TCONS_00057103 lncRNA upstream 355170 44353 ~ 45206 (+) True XLOC_026932
TCONS_00057102 lncRNA upstream 358769 40370 ~ 41607 (+) False XLOC_026932
TCONS_00053219 lncRNA downstream 141 402626 ~ 499946 (+) True XLOC_026947
TCONS_00057105 lncRNA downstream 175365 577850 ~ 587076 (+) True XLOC_026950
TCONS_00053225 lncRNA downstream 279016 681501 ~ 683465 (+) True XLOC_026953
TCONS_00057494 lncRNA downstream 300614 703099 ~ 720805 (+) False XLOC_026955
TCONS_00057495 lncRNA downstream 300621 703106 ~ 720805 (+) True XLOC_026955
TCONS_00053215 mRNA upstream 1925 391297 ~ 398451 (+) False XLOC_026944
TCONS_00053212 mRNA upstream 14208 357810 ~ 386168 (+) False XLOC_026943
TCONS_00053213 mRNA upstream 14580 357825 ~ 385796 (+) False XLOC_026943
TCONS_00053214 mRNA upstream 32394 359970 ~ 367982 (+) True XLOC_026943
TCONS_00053210 mRNA upstream 46452 332709 ~ 353924 (+) True XLOC_026942
TCONS_00053222 mRNA downstream 209878 612363 ~ 626550 (+) False XLOC_026951
TCONS_00053223 mRNA downstream 210957 613442 ~ 625814 (+) True XLOC_026951
TCONS_00053224 mRNA downstream 243669 646154 ~ 675427 (+) True XLOC_026952
TCONS_00053226 mRNA downstream 283672 686157 ~ 700697 (+) True XLOC_026954
TCONS_00053227 mRNA downstream 333910 736395 ~ 737520 (+) True XLOC_026956
TCONS_00053216 other upstream 2452 391376 ~ 397924 (+) True XLOC_026944
TCONS_00053217 other upstream 6474 393766 ~ 393902 (+) True XLOC_026945
TCONS_00053205 other upstream 83294 308688 ~ 317082 (+) False XLOC_026941
TCONS_00053220 other downstream 17174 419659 ~ 419774 (+) True XLOC_026948
TCONS_00053221 other downstream 151782 554267 ~ 554384 (+) True XLOC_026949
TCONS_00053233 other downstream 789042 1191527 ~ 1191644 (+) True XLOC_026966
TCONS_00053247 other downstream 1320418 1722903 ~ 1725794 (+) True XLOC_026977
TCONS_00053253 other downstream 1535037 1937522 ~ 1943586 (+) False XLOC_026986

Expression Profile

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