RNA id: TU2151889


Basic Information

Item Value
RNA id TU2151889
length 536
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G1881075
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 54673549 ~ 54677166 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAATTGCACAAAGCTTTCGGATGCGGGACTCTTGTGAACTACTTGCTGAACTGAAGGTAAAATTTACCTGTTTGTACTATTAACCTAGTAGTTAGCTAACTAGGTAAAACCAGCGCAACAAATAAGTAAAAGTAACTAGTTAGTGTGTGGATCGAAAAAGAAAACTGGCGAAAGTGCATCAGGACCCGAAGAAATACCTGATGGCAAACGAAATGATCATTTTGAACGTTTATGATATGGTAATTGTCTGGGAGGCTGGAAATACTTTGACCTGCACTTGAGATTCAGCCACACAGGCCACCAGCAGCTTGAAGAGGTCCTTCGGCATCAGGTTGATCAGATGCTCATAGCCAATATCCATAGGAGCACAGAGATATGAAGGATATGAACAGAGGAACAACCAGGATCTGGGGCCGTCCCACTGaacaaaaactggttgaattgtTTTTCCATTATATCTTACCAAATAACATGAACATTCAATGTCTCCATCTAGAAATGTGATGATCATGACAATAGTATTACACACCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2151830 lncRNA downstream 18024 54655213 ~ 54655525 (-) True G1881021
TU2151813 lncRNA downstream 41858 54631355 ~ 54631691 (-) True G1881006
TU2151809 lncRNA downstream 45288 54628059 ~ 54628261 (-) True G1881002
TU2151808 lncRNA downstream 45764 54627444 ~ 54627785 (-) True G1881001
TU2151780 lncRNA downstream 63461 54607994 ~ 54610088 (-) False G1880977
TU2151904 lncRNA upstream 675 54677841 ~ 54681307 (-) True LOC110502987
TU2151929 lncRNA upstream 47906 54725072 ~ 54728112 (-) True G1881100
TU2151945 lncRNA upstream 68110 54745276 ~ 54745681 (-) True G1881116
TU2151956 lncRNA upstream 74708 54751874 ~ 54752101 (-) True G1881125
TU2151975 lncRNA upstream 79016 54756182 ~ 54758635 (-) False LOC110502990
XR_005039096.1 mRNA downstream 11789 54660257 ~ 54661760 (-) True LOC118943819
XM_021581346.2 mRNA downstream 25601 54634879 ~ 54647948 (-) True LOC110502984
XM_021581344.2 mRNA downstream 109747 54561942 ~ 54563802 (-) True LOC110502982
XM_021581339.2 mRNA downstream 249603 54379417 ~ 54423946 (-) False LOC110502980
XM_036960805.1 mRNA downstream 249603 54379417 ~ 54423946 (-) True LOC110502980
XM_036960817.1 mRNA upstream 399 54677565 ~ 54694342 (-) False LOC110502987
XM_036960818.1 mRNA upstream 399 54677565 ~ 54694342 (-) False LOC110502987
XM_021581353.2 mRNA upstream 79013 54756179 ~ 54765441 (-) False LOC110502990
XR_005039272.1 mRNA upstream 79013 54756179 ~ 54765441 (-) False LOC110502990
XR_005039273.1 mRNA upstream 79013 54756179 ~ 54765441 (-) False LOC110502990
TU2151535 other downstream 426863 54244782 ~ 54246686 (-) False G1880780
TU2151379 other downstream 599600 54067787 ~ 54073949 (-) True LOC110503036
TU2149919 other downstream 1509198 53163242 ~ 53164351 (-) True G1879406
TU2149213 other downstream 2030040 52643088 ~ 52643509 (-) True G1878770
TU2148956 other downstream 2357771 52297228 ~ 52315778 (-) True LOC110502957
TU2152307 other upstream 325600 55002766 ~ 55003624 (-) True G1881414
TU2154312 other upstream 1928840 56606006 ~ 56610640 (-) False G1883219
TU2154381 other upstream 1966841 56644007 ~ 56709888 (-) False G1883244
TU2154350 other upstream 2023047 56700213 ~ 56709786 (-) False G1883244
TU2154362 other upstream 2023047 56700213 ~ 56709786 (-) False G1883244

Expression Profile