RNA id: TU2152517


Basic Information

Item Value
RNA id TU2152517
length 1857
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G1881601
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 55167582 ~ 55169458 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aataaaatggtggTTTATACAAAACATGAAAAAGAAAAGTAAAACACTTATAAGATGTGTAAACtttcaaaataacaaaataagTGTACCGAGCACTTCAGTATTCCCATCACTTTCTTTCTTTAATGTAATATACTGACACACATGATGGTGTGCAGAGGATAGGTACAGAGGCATCTCATTCTGATATCAGCTGTTCCATTTAGGTATTTGGTTTTGTCCTTCTGAATCCTAAAACCACTGACGGTGACACTTGAAGAGCCTTTGACACATTTGACAAATTATACCATTTCATTCCACTCTTGATGATTCCTCATCTTAAAAAACATTATGCCATTTTACTATTCAAACTGGGCACTTAGTGACATCAAAGTCTGTATATGAAGCAGAAAAGATGGAGCATGTTTTCTGGTACCTAACTTCACTATTGCTTAAGTATCTAAATACGGTTGCACGATCTTGAATACATTTTATACGACGACACATAACTTTACATGAAAGGCTTGTAAAATGGTCAGGCTAACCCTCCAAAAGGGAACTGAAGAGAAGCAGCAAACGCAGTGAGGATGTCaagtctatacacacacactgtatgagTACACGACAACATCCTCCCTTATGGAAATGTAGAATAGCGAGTGATTCAATGTCAGTAAAAGGCTTGCTACAGTCTTATGATCATCATTCATATATGTAGTAATGACAGTGGTTATAGCTAATGAAGCTTTGACGGTAACTTCTGTCTTTAATGACAGTGGTTACAGCTTCTGAAGCTTTGACGGTAACCTTGTTGCAGTCATGTTGTTTCATACAATTTCAAAGACCAATTTAAAGACCTTGTAAATCAACACTAAACAGACAGAGGTCCTCTTGGTAGAAGACCAACCTGCTCTCTCCAACAAAGGCCATTCAGGGTGTACATCTGGTACACCACTATGGACTCATGTTACTGTataaaatactacagtaaagagTAGGGATTCAGAACAGTCCAAGATGAAAAAGATCCGGTCAatgtcacatttttgttttcacttCCAGTTTACAAAGATACCGCATAGTCATAACAGGAAATATATCAAGTAATGCAAATCATATGAAATACGTCATTCAGGTCAAGGACCAGGCTTAAGGGCTCTAATCAATGTTTGCGCCGCGTTCCAAAAATGAATGGTTTAGGCTACATACAAgcattactgtactgtaacataGTTTAACATGGTACTGTAACAGTCTTAAATCGTTTCAAACACTAAAAACATTTTTTCATGTGAAATGCATTTCACCATAACAATGTATAAGATTCTCTGGGTACAGAATTGTTCAGAGAAGTTGAAATTCAGTATTTTAGACAAATGTGCAGAAAATAGATAGAAAACAGATTACCAGCAAAACAGATAAATTACCATTCAAAATACAATAAGAAACATTTTGAGTTTGCTCCACTGTACACTTATTTCAAACTTGGCTCACATAAAAAACCTCTTTACTGTTAGCTTTGGTAGGTTACTAGGGTGGTGGAGGTTCATTCTGAAATATTCCCGAAAGAGGGCAAATTGTTCTTTGAGGCAGGTGTTCTATATATGACGCATCAGAGGGTGGGAACCTCCTCACTTCTGAGTGATGGCACTCTCTTCTCCACTGGGGTGGATGCGGTTGAAGTGCAGGCTTCCCAGGTCTCTGGCTGACACAGACCCTGACCCCTCAGTGGGTGCCGAGGAGGCGGTGTAGCCCCTGGCTGCAGGTCCTGGGAGGGTCTTCTGGGGCCCCTGAGAACCAGGAGAGGGCTTGGGTGTAAGGGGGCTGGTCAGGTCAAGGCTGCTCAGGGCATCCAGGGTGCCTTCAGGATCCACCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2152497 lncRNA downstream 22016 55145303 ~ 55145566 (-) True G1881585
TU2152495 lncRNA downstream 24265 55142872 ~ 55143317 (-) True G1881583
TU2152493 lncRNA downstream 27609 55139665 ~ 55139973 (-) True G1881581
TU2152492 lncRNA downstream 28531 55138668 ~ 55139051 (-) True G1881580
TU2152491 lncRNA downstream 30191 55137093 ~ 55137391 (-) True G1881579
TU2152528 lncRNA upstream 11635 55181093 ~ 55182919 (-) False G1881609
TU2152530 lncRNA upstream 11635 55181093 ~ 55184554 (-) False G1881609
TU2152531 lncRNA upstream 11635 55181093 ~ 55184438 (-) False G1881609
TU2152532 lncRNA upstream 12785 55182243 ~ 55184554 (-) True G1881609
TU2152570 lncRNA upstream 52670 55222128 ~ 55222480 (-) True G1881644
XR_002470407.2 mRNA downstream 96436 55068829 ~ 55071146 (-) False LOC110502991
XR_002470409.2 mRNA downstream 96436 55068829 ~ 55071146 (-) False LOC110502991
XR_002470408.2 mRNA downstream 96436 55069915 ~ 55071146 (-) False LOC110502991
XM_021581354.2 mRNA downstream 399917 54756179 ~ 54767665 (-) False LOC110502990
XR_005039273.1 mRNA downstream 402141 54756179 ~ 54765441 (-) False LOC110502990
LOC110502996 mRNA upstream 21012 55190470 ~ 55204193 (-) True LOC110502996
XM_021581360.2 mRNA upstream 811809 55981267 ~ 55984852 (-) False LOC110502998
XM_021581361.2 mRNA upstream 811809 55981267 ~ 55984852 (-) True LOC110502998
LOC110503038 mRNA upstream 874873 56044331 ~ 56059595 (-) False LOC110503038
XM_036960866.1 mRNA upstream 1590621 56760079 ~ 56780244 (-) True LOC110503002
TU2152307 other downstream 163958 55002766 ~ 55003624 (-) True G1881414
TU2151535 other downstream 920896 54244782 ~ 54246686 (-) False G1880780
TU2151379 other downstream 1093633 54067787 ~ 54073949 (-) True LOC110503036
TU2149919 other downstream 2003231 53163242 ~ 53164351 (-) True G1879406
TU2149213 other downstream 2524073 52643088 ~ 52643509 (-) True G1878770
TU2154312 other upstream 1436548 56606006 ~ 56610640 (-) False G1883219
TU2154381 other upstream 1474549 56644007 ~ 56709888 (-) False G1883244
TU2154350 other upstream 1530755 56700213 ~ 56709786 (-) False G1883244
TU2154362 other upstream 1530755 56700213 ~ 56709786 (-) False G1883244
TU2154370 other upstream 1530755 56700213 ~ 56709786 (-) False G1883244

Expression Profile