RNA id: TU2152576


Basic Information

Item Value
RNA id TU2152576
length 212
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1881650
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 55234013 ~ 55234224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGATTGGAGTGTTTGTTGTTTTCCTCCATTTTTGACTTATCTAAATGCCTCTCTTTCCACttaccccatctctctgtctctctctctgtctctcgctctctcaattcaattcaattcaagggctttattggcatgggaaacatgtgttaacattgccaaagcaagtgaggtagacaacatacaaagtgaatatataaagtgaaaaacaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2152570 lncRNA downstream 11533 55222128 ~ 55222480 (-) True G1881644
TU2152530 lncRNA downstream 49459 55181093 ~ 55184554 (-) False G1881609
TU2152532 lncRNA downstream 49459 55182243 ~ 55184554 (-) True G1881609
TU2152531 lncRNA downstream 49575 55181093 ~ 55184438 (-) False G1881609
TU2152528 lncRNA downstream 51094 55181093 ~ 55182919 (-) False G1881609
TU2152626 lncRNA upstream 49594 55283818 ~ 55284155 (-) True G1881697
TU2152655 lncRNA upstream 71488 55305712 ~ 55305992 (-) True G1881726
TU2152707 lncRNA upstream 112867 55347091 ~ 55352670 (-) True G1881773
TU2152711 lncRNA upstream 120470 55354694 ~ 55357202 (-) True G1881777
TU2152717 lncRNA upstream 142083 55376307 ~ 55383142 (-) True G1881780
LOC110502996 mRNA downstream 29820 55190470 ~ 55204193 (-) True LOC110502996
XR_002470407.2 mRNA downstream 162867 55068829 ~ 55071146 (-) False LOC110502991
XR_002470409.2 mRNA downstream 162867 55068829 ~ 55071146 (-) False LOC110502991
XR_002470408.2 mRNA downstream 162867 55069915 ~ 55071146 (-) False LOC110502991
XM_021581354.2 mRNA downstream 466348 54756179 ~ 54767665 (-) False LOC110502990
XM_021581360.2 mRNA upstream 747043 55981267 ~ 55984852 (-) False LOC110502998
XM_021581361.2 mRNA upstream 747043 55981267 ~ 55984852 (-) True LOC110502998
LOC110503038 mRNA upstream 810107 56044331 ~ 56059595 (-) False LOC110503038
XM_036960866.1 mRNA upstream 1525855 56760079 ~ 56780244 (-) True LOC110503002
XM_021581369.2 mRNA upstream 1622356 56856580 ~ 56886643 (-) False LOC110503005
TU2152307 other downstream 230389 55002766 ~ 55003624 (-) True G1881414
TU2151535 other downstream 987327 54244782 ~ 54246686 (-) False G1880780
TU2151379 other downstream 1160064 54067787 ~ 54073949 (-) True LOC110503036
TU2149919 other downstream 2069662 53163242 ~ 53164351 (-) True G1879406
TU2149213 other downstream 2590504 52643088 ~ 52643509 (-) True G1878770
TU2154312 other upstream 1371782 56606006 ~ 56610640 (-) False G1883219
TU2154381 other upstream 1409783 56644007 ~ 56709888 (-) False G1883244
TU2154350 other upstream 1465989 56700213 ~ 56709786 (-) False G1883244
TU2154362 other upstream 1465989 56700213 ~ 56709786 (-) False G1883244
TU2154370 other upstream 1465989 56700213 ~ 56709786 (-) False G1883244

Expression Profile