RNA id: TU2152626


Basic Information

Item Value
RNA id TU2152626
length 338
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G1881697
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 55283818 ~ 55284155 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcattgtaaagggtttaaacactgtttcccctgcttgTTCAACGAACCATAAACAAtttatgaacatgcacctgtggaacattcgttaagacactaacagcttacagatggtaggcaattaaggtcacagttacgaaaaggacactaaagagacctttctactgactctgaaaaacacaaaaagaaatatgctcagggtccctgctcatctgcgtgaacatgccttaggcatgctgcaaggaggcatgaggactgcagatgtggccagggcaataaattgcgatgtctgtactgtgagacgcctaagacagcgctacagggagacaggacggacagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2152576 lncRNA downstream 49594 55234013 ~ 55234224 (-) True G1881650
TU2152570 lncRNA downstream 61338 55222128 ~ 55222480 (-) True G1881644
TU2152530 lncRNA downstream 99264 55181093 ~ 55184554 (-) False G1881609
TU2152532 lncRNA downstream 99264 55182243 ~ 55184554 (-) True G1881609
TU2152531 lncRNA downstream 99380 55181093 ~ 55184438 (-) False G1881609
TU2152655 lncRNA upstream 21557 55305712 ~ 55305992 (-) True G1881726
TU2152707 lncRNA upstream 62936 55347091 ~ 55352670 (-) True G1881773
TU2152711 lncRNA upstream 70539 55354694 ~ 55357202 (-) True G1881777
TU2152717 lncRNA upstream 92152 55376307 ~ 55383142 (-) True G1881780
TU2152745 lncRNA upstream 134732 55418887 ~ 55419204 (-) True G1881807
LOC110502996 mRNA downstream 79625 55190470 ~ 55204193 (-) True LOC110502996
XR_002470407.2 mRNA downstream 212672 55068829 ~ 55071146 (-) False LOC110502991
XR_002470409.2 mRNA downstream 212672 55068829 ~ 55071146 (-) False LOC110502991
XR_002470408.2 mRNA downstream 212672 55069915 ~ 55071146 (-) False LOC110502991
XM_021581354.2 mRNA downstream 516153 54756179 ~ 54767665 (-) False LOC110502990
XM_021581360.2 mRNA upstream 697112 55981267 ~ 55984852 (-) False LOC110502998
XM_021581361.2 mRNA upstream 697112 55981267 ~ 55984852 (-) True LOC110502998
LOC110503038 mRNA upstream 760176 56044331 ~ 56059595 (-) False LOC110503038
XM_036960866.1 mRNA upstream 1475924 56760079 ~ 56780244 (-) True LOC110503002
XM_021581369.2 mRNA upstream 1572425 56856580 ~ 56886643 (-) False LOC110503005
TU2152307 other downstream 280194 55002766 ~ 55003624 (-) True G1881414
TU2151535 other downstream 1037132 54244782 ~ 54246686 (-) False G1880780
TU2151379 other downstream 1209869 54067787 ~ 54073949 (-) True LOC110503036
TU2149919 other downstream 2119467 53163242 ~ 53164351 (-) True G1879406
TU2149213 other downstream 2640309 52643088 ~ 52643509 (-) True G1878770
TU2154312 other upstream 1321851 56606006 ~ 56610640 (-) False G1883219
TU2154381 other upstream 1359852 56644007 ~ 56709888 (-) False G1883244
TU2154350 other upstream 1416058 56700213 ~ 56709786 (-) False G1883244
TU2154362 other upstream 1416058 56700213 ~ 56709786 (-) False G1883244
TU2154370 other upstream 1416058 56700213 ~ 56709786 (-) False G1883244

Expression Profile