RNA id: TU2154313


Basic Information

Item Value
RNA id TU2154313
length 4365
lncRNA type antisense_over
GC content 0.40
exon number 4
gene id G1883219
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 56606006 ~ 56610640 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTAATAAGTTCCAAAAACCAACAGTACACATTCACATCCTTTTGGCACACAGCCAAAATGCTTACAATTACATACAGTAATGAATGCCAAAGGACTTCAAAATAAAACAGCCAGGTGACAAACTGTACATAGAAAGCTTCACAATACAGAAACCAGAAATCCAATACTATTGTCCAGATTCCCAGACCCAGAATCAGTGTCGTCCTGGATTAAAAAGACATTCCAATAGATATTCTTAAATGAGCATGCTTTTATTACAGAAGTAGTCTCCATTAGGAAACCCTACATGTACAGAGGTACATACAGTAATATGATGCATGTGGCCCACCGCTGTGTCTTTTATTCTACTGTATGTAACAAACACATAATATTTCGCCAGATGTACTTCTTCAACAATGTACATTGTACTCATTCATCTGCTTCACTGGCCTTACAACAGACAAATTAGTTTCCTAtgagttttttttcttcctttacAAACAGTTTAAAAAGTACACAATAAAAGGACCATAGAAAGTTGGAGTTAAGGATTTGGCTTGGAGCATTTTGGACCTCTAGGGACACCGTCCGTATGGGTCGGAGTAGGACGTGCGTCTGCCATCttacaaaacaaaacacaaatgTCCTCTCTTTAACACTGTTCTCATGTTGGGGGTCATGTGATTAATTGACATAGGTGCAGCTGCTTTGGGTGTATGAGCGGCCTTCAtgcagtggtgtgtgtggggCAGGGGCATCAGTATTGCTTTGGGTGTATGAGCTGCCTTCATGCAGTGGTGTGTGTGGAGCAGGGGCATCAGTATTGCTTTGGGTGTATGAGCGGCCTTCATGCAGTGGTGTGTGTGGAGCAGGGGCATCAGTATTGCTTTGGGTGTATGAGCGGCCTTCATGCAGTGGTGTGTGTGGAGCAGGGGCATCAGTATTGCTTTGGGTGTATGAGCGGCCTTCATGCAGTGGTGTGTGTGGAGCAGGGGCATCAGTATTGCTTTGACAGTTGATTCCATGATACCGTCACCTATTAACGCTGCTACAACCACTGTTGCTACAGTTACTCCTGCTCCCCATAGCAGAGTAGCTACTACTAGCACTAGCACTGTTATACATGCTACTAATAATACTAcaataactactactactactactacaataacaactgctactgctacttctacaGTAGTCATACTATCACTACTACACTACCTCTTCAATTGCAAATAGTCCTACTGTTATGAATCCAACATTTGAAAGTTACTTTCAAGTTTCTACTCTAAAATGGAATGTACAACTTGCAATATCATAACAAACCAACATTGTTCTTTTTGTGTTCTACTGACAGAATATGACAGTAGATTTGACTTTACCTTGATTTGGTGTAGGCTTACAATATCACATACATCTTATATATCTTGTATCTTATATATCTTGTATCTTGGCCAGAGAGTTATTTGGCTTGAATGCAATAAGAAGGTCGATGGTTTCTATAAGCTTAATGAATCCAATAGATTTACTACCTTTGGTAATATTAATGTTCTAAAGAGATATGCTACAGGAAATGTGGACCTTTTTTAAAAGAGATATGCTACAGGAAATGTTgaccttttttttaaagagatATGCTACAGGAAATGTTGACCTTATTTAAAAAGAGATGCTGTAGGAAATGTTGACCTTTTTTAAAGAGATATGCTACAGGAAATGTTGACTTTTTAAAGAGATATGCTACATGAAATGTTTACTTTTTAAAGAGATATGCTATAGGAAATGTTGACCTTATTTAAAAAGAGATGCTGTAGGAAATGTTGACTTTTTAAAGAGATATGCTACATGAAATGTTTACTTTTTAAAGAGATATGCTATAGGAAATGTTGACCTTATTTAAAAAGAGATGCTGTAGGAAATGTTGACCTTTTTTAAAGAGATGCTACAGGAAATGTTGACTTTTTAAAGAGATATGCTATAGGAAATGTTGACCTTTTTTAAAAGAGATATGCTACAGGAaatgttgacctttttaaagAAGTATGCTATagaaaatgtttacatttttaaaGAGATATGCTATAGGAAATGTCAACCTTTCTTCAAAAGAGttgagagagggcagggagaggggTGGTGAGGTGGTTTGATGGAACACTCTGAAGGAAGCACATAGACATGGCTATCAATGGGGTTAACGACAGGCAAATGAAAACAGCCATGCATACACTGTCAAAACCatacagaacaacagcaaagagtCAGTGGGAGGATGAACAGCGAAGACACCTGGCAAGAAAGCAAAGGAAaccaaaaacagacagacagacatagaatATTGCACATGGACATTGTCACTTTTTCATATTCTAGTAATACACAATAACATCATATGCATAACCATGCAATAGATGATACCTCTATTTCTCCAAGAAGTCCACAGGCTTCTATATGCAAGGTGGTCTGTACAGAGGGAAAGACATGGCTATCTGGTGATGCCTTCCCTCACATGATTGTGAGTCTTGTTGCATAGCAGGGAAATCCAGGATTTCAGACACTGAGCAACAAGACAATCCAGTAAAATCACGACAAAATAAAAcacacaataaaataaaacacacaatgaaataaaacacacaataaaataaaacacacaataaaataaaacacacaaTGAAATAAAACACAAGAAAATAAAACAGACACAATGAAATGTTAAATCTTCAAGAGGGCCCTTCTCATGCACACGCACAAACAGACTCACACAAACTAGCGTACGTGCAGTATacttactgacacacacacacgcacacgcacacacatacacacaaacagacccGATACATTCAGTTGCATCCCCACCATCACTCATGCATACAAGCACATTTGTCCACATTGAAACCCATGACATTCATTTGGAATACATGAAGCTAGACTACCATAACACTGTGGGCATATCTACAACATGTAACTGATCTGCAGCTACACACAATGGGCATTTGATGTACTGTACATGGACTTGTTCTAATTCTGCCGTCGTTTTGATCTTGAGGAAACTTTGAAACAGGCTTCTCTTTTTTATTGACACTGTGAACCAATTGGTTTTAGCTTTTTTAAATACAATCATTGGTTCTAtggattcgtttttttttttgcatttaaaCATGGCAGAGGAGGACATTCTAGTGCATCCAGTTTAAACATGGCAGAGGAGGAGGACATTCTAGTACATCCAGTTTAAACATGGCAGAGGTGGAGGACATTCTAGTACATCCAGTTTAAACATGGCAGAGAAGGAGGACATTCTAGTACAATGAGAAATGTACAGGACAGTTTAAGAAATTACAGATTAATTTAATAACATAATTATTTCAGTATCATATACTCACTGAGGAACTAGGATGGTTGACGAAACAGTTGAAAGTCTGACCTATTGTAAGGAGACCATGTCGAACAAGACCCCTGCCCAAAGCACACATAACCCCTGACCTTTAAATCCTTATATAGACAAAAAGTTGACACCGTCACATAAACATTCCCTGTACATTTCATAGTCCACTGGAAAGGGCCTTGTGACAATCTGTGGCAGGACTGTGAGGAGCTTTCATCACTGTTATCAGCCCGGTCCAGTGGGGCAAGGGCCAGGCTATATTCAGTGTCAGGGGGCCAATCCTAGGGCCACCCTCCACCACAAAGAGTGTGGTTTGATCCACCACTCTGATCTGGACCAGCCAATAGGACCTTGATAATAAAGCAGATGGGCTTCCTATCTGACCTACTCTTGAATTACATTGGTTTGTAACTTAGAAAGCATGcacggatggacagacagacatacagacagatacTGGTAGAGCGCTGTAGATGCTCTGGTTTAGGTTTTGAAGTTGGTACTAATCTGAGGCCCTAATGGCCGGAGTTTTATATGAGTGTGTGAAAGTAATAATTTACTCTGTGTGTATTTTATAATTCTGTATGGGAGAAAATACATGGGtttgcatgtatgtatgtatgtatgtttgtatgtgtgttcttAAAtttgtgtgtatgtcagtgttcctgcatgtatgtgtgtctatacgtgtttgtttgtgtgtgtgtgtgtgtgtgtgttggtgtgtgtgtgtgtgttggtgtgtgtgcagGCCTTAGGACAGATTCTCCTCCCCTCCAAAGTAGGAGAAACCCTTGAACTCATCTTGGTTGATCTGCTTAATAATGGCGTCTTCTACAGGGGTGAGGACAGAGTCTCCTCCCCTCCAAAGTAGGAGAAACCCTTGAACTCGTCTTGGTTGATCTGCTTAATAATGGCGTCTTCTACAGGGGTGAGGACAGGCTCCTCGCGAGTGAAGTCCTGGTCAAAGTTGTTCACGTCCCTTTTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2154267 lncRNA downstream 82168 56523394 ~ 56523838 (-) True G1883179
TU2154261 lncRNA downstream 125968 56475315 ~ 56480038 (-) True G1883174
TU2154263 lncRNA downstream 127977 56476541 ~ 56478029 (-) True G1883175
TU2154257 lncRNA downstream 133055 56470579 ~ 56472951 (-) True G1883172
TU2154240 lncRNA downstream 154227 56449952 ~ 56451779 (-) True G1883157
TU2154338 lncRNA upstream 23348 56633988 ~ 56683894 (-) True G1883236
TU2154386 lncRNA upstream 37002 56647642 ~ 56648360 (-) True G1883248
TU2154389 lncRNA upstream 39559 56650199 ~ 56655091 (-) True G1883250
TU2154410 lncRNA upstream 65067 56675707 ~ 56677360 (-) True G1883271
TU2154360 lncRNA upstream 75698 56686338 ~ 56709888 (-) False G1883244
LOC110503038 mRNA downstream 546411 56044331 ~ 56059595 (-) False LOC110503038
XM_021581360.2 mRNA downstream 621154 55981267 ~ 55984852 (-) False LOC110502998
XM_021581361.2 mRNA downstream 621154 55981267 ~ 55984852 (-) True LOC110502998
LOC110502996 mRNA downstream 1401813 55190470 ~ 55204193 (-) True LOC110502996
XR_002470408.2 mRNA downstream 1534860 55069915 ~ 55071146 (-) False LOC110502991
XM_036960866.1 mRNA upstream 149439 56760079 ~ 56780244 (-) True LOC110503002
XM_021581369.2 mRNA upstream 245940 56856580 ~ 56886643 (-) False LOC110503005
XM_036960867.1 mRNA upstream 245940 56856580 ~ 56886643 (-) True LOC110503005
XM_036960871.1 mRNA upstream 296840 56907480 ~ 57068071 (-) True LOC110503039
XM_036960868.1 mRNA upstream 460687 57071327 ~ 57116725 (-) False LOC110503007
TU2152307 other downstream 1602382 55002766 ~ 55003624 (-) True G1881414
TU2151535 other downstream 2359320 54244782 ~ 54246686 (-) False G1880780
TU2151379 other downstream 2532057 54067787 ~ 54073949 (-) True LOC110503036
TU2149919 other downstream 3441655 53163242 ~ 53164351 (-) True G1879406
TU2149213 other downstream 3962497 52643088 ~ 52643509 (-) True G1878770
TU2154381 other upstream 33367 56644007 ~ 56709888 (-) False G1883244
TU2154350 other upstream 89573 56700213 ~ 56709786 (-) False G1883244
TU2154362 other upstream 89573 56700213 ~ 56709786 (-) False G1883244
TU2154370 other upstream 89573 56700213 ~ 56709786 (-) False G1883244
TU2154376 other upstream 89573 56700213 ~ 56709888 (-) False G1883244

Expression Profile