RNA id: TU2154381


Basic Information

Item Value
RNA id TU2154381
length 4685
RNA type TUCP
GC content 0.39
exon number 2
gene id G1883244
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 56644007 ~ 56709888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaataataacaatataatgaATTCTATATAAATCATAGGATCATCTAAAATAACTAAGACATACAAAAATGTAATGGATAAAAGCAGAAAAAACAACCCTCATTATATTTAGTAGCCTAGAATGCTGATATTGCCTTTAAAGAGGATGAGAACTGAGATTGTTCAATTATTCATATTGCTAAATGTTGTTTTTTGGCCCTTGAAGTGTCACAGTAGCTACAGCTAGTACTGGTGCTACGCCTTGTTTCTGCAGTTATTTTGTGACCGGAACTCAATTAAGGCCAAATCACATCTGCAGTTCTATCTGACATCTCAGCCTTGACTCATCTCCGTCAGGAACAGGAGCATGGCCTGCAAGGTGGAGAACTTTATCTTTATCTTACTTTGGCTTTTCTATCGCTTAAAATTCAAGTAATAACAAGAGATTTTAACTCAAAGAAGTTCAAAATCACAAATGCAAAGCATGGAATTCTTCTTGCTTTTATCTGTTAAATACTGCATATTTGTGCATATAGGGACCAACACCAGAAATGTTTCGGCTAACGGAGTGGTCTGATCTAACTATCGGTAACTCATTTATgtactcctcctccccctcattcccatagaataaataaatatatgaaaTTATACATCCCATAATTTTATCCTTGTGTTTATTTATATGGAACATGGCTAATTTAAGAAAACGTTCCACATTCCATTCACTTTGGCTCAACGACAACAAGGAGCTTATTTTCTCATGTCTTTGGAGGAACTCACGGTGTCTATATTTCCATTAACAGTGGAAACAATATTTTGTCTAAAATGTTCTAAGGTTGACAGAATAGCTAAACTTGACAGGGCTGATCCTAAAATTGAAcgtgggagggaaagagagcgggagggagagagggagggaaagagagagtatgacagagggagggagagggagagaaagatagaggatgagagagagggagggagagagggagggagggagggaaagagagaggatgagagagagggagtgagagaaagcgaCGAGCTGAATAATGTGTGAAGTAGCGTGGAGAGATAAGTGCATCAGTCACAGTTCAGCACCacagtccctctctctatatGTCAGTCACAGTTCAGCACCACAGTCCCTCTCTATATGTCAGTCACAGTTCAGCACCACAGTCCCTCTCTATATGTCAGTCACAGTTCAGCACCACAGTCCATCTCTCTATATGTCAGTCACAGTTCAGCACCACAGTCCATCTCTCTATATGTCAGTCACAGTTCAGCACCACAGTCCCTCTCTATATGTCAGTCACAGTTCAGCACCACAGTCCCTCTCTATATGTCAGTCACAGTTCAGCACCACAGTCCCTCTCTATATGTCAGTCACAGTTCAGCACCACAGTCCATCTCTCTAAATGTCAGTCACAGTTCAGCACCACAgtccctctctatctgtccctcagCTCTCCGTCTTACTTCTGTCACTGTCTTATAGCTCTATCACCATTTGTTCCAACAGGTCCCAACAGGTCCCAAAAGGTTTCAACAGGTTTCTGCCACCCATTGCTCTACACGTAACAATTACTGAGTCTAACACAGAAATAATCTGAGGTTCAACCGTTTTGATTTTGATATTTGTGTATCGACcataggaggttggtggcaccttaattggggaaggCGGgcacgtggtaatggctggagcggaatatgTGGAAAGGTATCAAAAACACCAAACCAATGATTTCCATGTGTtttatgccattccattcactccgttccagccattattatgatccgtcctcccctcagcagcctctatTGGTATTGACAAAACATATGCTACCAAGAGGTCAAGGGAAGTGCCTGAGTATTTGATATTGACGGTTGGTCGTTAAAGTTCTCACACACTGGgggcacactggttgaatcaaaattgtttccacctcatttcaaTTAAATGATGTTGGACCAATGTAGGACAGACATATCACCCTCACTGATTAACACCCTCTGCACCACATTACAGCCTCTTATTATTGAACTACCCAAACCCACATGAAATCCTGAGAACGAtggtcgtgccattcatccgctgccatcacctcttgtttcagcatgataatgcacagccccatttcacaaggatctgtgcacaattcctggaagctgaaaatgtccacgTTCATCCATGGCTTGCATAGTCACCAGTCATGTCACCTATTGAGAATGTTTtagatgctctggattgacgtgtacgacagcgtgttccagttccctccaatatccaacaacttcacacagccactgaagaggagtgggacaacattccacaggccacaaccaaCAGCCTGATTCAACTTTGAAAAGGAtgtgtgtcacgctgcatgaggcaagacactgactggttttctgatccacgcccaactttaaaaaaaaaagtatatgtgagcaacatatgcatatctatattcccagtcatgtgaaataaatagattagggcctgattCATTTggttcaattgactgatttcctatatgaactgtaactcagtgaaatctttCATTtgacgtttatatttttgttcagtataatttggTTGGAGGCATGATTCTCAATTACTGTGTCATTTATTAACCTGTGGTAAGTTGCAGGTGCCTACAGGGTAAAAATAGCCATTCAACATTCTGCTCCATTGCACTCaggtgccaatatatttgaccACATCTGTAGGTCGACGTAGTGAATCAGATTCTTTATCCTTCTAGAATAGTCTCCTCAAAACATCTCTCGTTATCACAACTAGGGGAGGTCTACACTGGACTAATGACATATACTCAACATAATTACATATAGTCAACATATCGGATCTTAAGCTAGGGCTCGCCAAGCTAAACATCAGGATTTGTATAGTGTGGGTTTTATTGGACGTCTATGTTTACAGAGACAATCTGTGCATTTGAAGGGCATAACACTGGGCTGAGTCAACATTGAGATAACCTTAAGGCAATGTTAAGGCAAATTACAGTGAGctcaaagtattgggacagtgcatttgttgttgttattctgtctctgtactccagcactttggattttaaaaCAATACAATGACTTTGATGTTAAACTGCAGACTGTCAgcttaatttgagggtatttcatCCATATCGGTTGAACCGTTTaggaattacagcactttttgtacatagtccccccattttattTGACCAAAAGTTTGGGggcaaattcacttatgtgtatggTGCCCTACCAAGCAAAGAGTTCATGTAATTTTTgcaacattaaatacatgcttaatcatgtgaacaagtatcctgcctctattgtattgtgttttggagaaaatgggggtcatgttagcagtaactgcacAAAGTAAaccaaggtaaataaataaaagcaattcttctcagttccacgctatgagcagttactacctttttgcttggtagggcagtattaaagtagtcaaaagttaaatatttggtcccatattcctagcacgcattgttggatgcatttgctcttTATTTTGGTTGAGTTTCAGAGTATTTTGTGCACAATAGAAGTTAATGCTAAATAATGTACTGTGTCATTTTGGTCACATTGTAAATAATTATAAAatgtgtttctaaacacttctacattaatgtggaacTGAATtcattgtgaataatgatgagtgggAAAGTtccagatgcacaaatatcatacctgcaagacatgctaacctctcacatTAAAATAAAAGGGGAGGTTATCATTTTGAGGGGGTTTGATATTTGAGCGTCTGTAACTTTGCACAACTAGTGCTGTAATTCctaaacggttcacccaatatggataaaaataccctcaaattgaagctgacagtctgcatttTGACCTCATTATATTATACAATAtatcaaatccaaagtgctggattacagagctgaaacaacaacaaatgtgtcactATCCCAATCCTGTTGGAGCTATAAATCACCTTTAAAGACAATGTCAGCaagaaaaataaacaacaacaaatgtgtcactATCCCAATCCTGTTGGAGCTATAAATCACCTTTAAAGACAATGTCAGCAAGAAAAATAAACAACAGCATCAAAATACAGTGTTAATAAAAGTGGATCCAATAAACATATAAAGATTCCTCTACAAATGCTAGATGGTTATATCTATAAAGCACCATCACCTTTTTAGATACTGTTGAAAGAGATTACTGTGTCAATTTCATTTGTTTACAATATTCAAAattatacagtacctgtcaaaagtttggacacacctactcattcaactaaaaacaaaaaactagAACAAAAATTAAAACTGTGaaacccatatggaatcatgtaataaccaaaaaagtgttaaacaaatctaaatagatTTTAAATTCTTGTAGTCgtcctttgccttggtgacagctttgcacactcttggcattctctcaacctgcttcatgttattcctcaatgtagaaaataataaaaatacagaaaaacccttgaatgagtaggggagtccaaacttttgactggtactgtgtatctttcatatttttttctctcaatttTCTTTTTTCTTTAAAGCGCAATAACAGATCACTACTGGCCTGCCAAGTAATTCATTATACTTGTACAAAAAAAGAaaaatgagagaaaaaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2154313 lncRNA downstream 33367 56606006 ~ 56610640 (-) False G1883219
TU2154314 lncRNA downstream 33367 56606006 ~ 56610640 (-) True G1883219
TU2154267 lncRNA downstream 120169 56523394 ~ 56523838 (-) True G1883179
TU2154261 lncRNA downstream 163969 56475315 ~ 56480038 (-) True G1883174
TU2154263 lncRNA downstream 165978 56476541 ~ 56478029 (-) True G1883175
TU2154453 lncRNA upstream 22905 56732793 ~ 56775015 (-) True G1883306
TU2154552 lncRNA upstream 178667 56888555 ~ 56888772 (-) True G1883392
TU2154556 lncRNA upstream 180041 56889929 ~ 56890159 (-) True G1883396
TU2154557 lncRNA upstream 181526 56891414 ~ 56891718 (-) True G1883397
TU2154751 lncRNA upstream 193483 56903371 ~ 56905418 (-) True G1883574
LOC110503038 mRNA downstream 584412 56044331 ~ 56059595 (-) False LOC110503038
XM_021581360.2 mRNA downstream 659155 55981267 ~ 55984852 (-) False LOC110502998
XM_021581361.2 mRNA downstream 659155 55981267 ~ 55984852 (-) True LOC110502998
LOC110502996 mRNA downstream 1439814 55190470 ~ 55204193 (-) True LOC110502996
XR_002470408.2 mRNA downstream 1572861 55069915 ~ 55071146 (-) False LOC110502991
XM_036960866.1 mRNA upstream 50191 56760079 ~ 56780244 (-) True LOC110503002
XM_021581369.2 mRNA upstream 146692 56856580 ~ 56886643 (-) False LOC110503005
XM_036960867.1 mRNA upstream 146692 56856580 ~ 56886643 (-) True LOC110503005
XM_036960871.1 mRNA upstream 197592 56907480 ~ 57068071 (-) True LOC110503039
XM_036960868.1 mRNA upstream 361439 57071327 ~ 57116725 (-) False LOC110503007
TU2154312 other downstream 33367 56606006 ~ 56610640 (-) False G1883219
TU2152307 other downstream 1640383 55002766 ~ 55003624 (-) True G1881414
TU2151535 other downstream 2397321 54244782 ~ 54246686 (-) False G1880780
TU2151379 other downstream 2570058 54067787 ~ 54073949 (-) True LOC110503036
TU2149919 other downstream 3479656 53163242 ~ 53164351 (-) True G1879406
TU2154750 other upstream 402245 57112133 ~ 57116693 (-) True LOC110503007
TU2155344 other upstream 880156 57590044 ~ 57591562 (-) True LOC110503041
TU2155498 other upstream 1024469 57734357 ~ 57735498 (-) True G1884227
TU2156522 other upstream 1524331 58234219 ~ 58242567 (-) True G1885150
TU2157260 other upstream 2379785 59089673 ~ 59090564 (-) True G1885863

Expression Profile