RNA id: TU2155301



Basic Information


Item Value
RNA id TU2155301
length 268
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1884073
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 57574112 ~ 57574379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agatattactgcactgtcggagctagaagcacaagcatttcgctacacacccaataacatctgctaaacacttgtatgtgaccaataacatttgatttgatttgtaaagcAATCTCAACGAGAACctccattgaaagtgctttttCATCCAGGACAAGGTTTAGCCTAATCTGTGACCGGGAAACTGGCCCTGTGAATGTCTACAAGGTATTTCCTCTTTTATAAAGAGCTTCTGCAACCTCCTGTCAATGAATAATCTTCTGAGAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2155297 lncRNA downstream 4887 57568865 ~ 57569225 (-) True G1884069
TU2155284 lncRNA downstream 21051 57552828 ~ 57553061 (-) True G1884056
TU2155266 lncRNA downstream 43820 57529361 ~ 57530292 (-) True G1884046
TU2155252 lncRNA downstream 86503 57487293 ~ 57487609 (-) True G1884032
TU2155251 lncRNA downstream 87362 57486545 ~ 57486750 (-) True G1884031
TU2155350 lncRNA upstream 25281 57599660 ~ 57599898 (-) True G1884114
TU2155353 lncRNA upstream 29454 57603833 ~ 57604116 (-) True G1884117
TU2155365 lncRNA upstream 51126 57625505 ~ 57625910 (-) True G1884129
TU2155370 lncRNA upstream 52628 57627007 ~ 57629531 (-) True G1884132
TU2155375 lncRNA upstream 58486 57632865 ~ 57633217 (-) True G1884136
XM_036960876.1 mRNA downstream 140656 57389610 ~ 57433456 (-) True LOC110503011
XM_021581375.2 mRNA downstream 140662 57389610 ~ 57433450 (-) False LOC110503011
XM_036960875.1 mRNA downstream 140959 57389610 ~ 57433153 (-) False LOC110503011
XM_036960872.1 mRNA downstream 192461 57339527 ~ 57381651 (-) False LOC110503010
XM_036960878.1 mRNA upstream 15622 57590001 ~ 57616121 (-) False LOC110503041
XM_036960890.1 mRNA upstream 454279 58028658 ~ 58372503 (-) False LOC110503044
XM_036960891.1 mRNA upstream 454279 58028658 ~ 58372503 (-) False LOC110503044
XM_036960885.1 mRNA upstream 454279 58028658 ~ 58372504 (-) False LOC110503044
XM_036960886.1 mRNA upstream 454279 58028658 ~ 58372504 (-) False LOC110503044
TU2154750 other downstream 457419 57112133 ~ 57116693 (-) True LOC110503007
TU2154376 other downstream 864224 56700213 ~ 56709888 (-) False G1883244
TU2154351 other downstream 864224 56706114 ~ 56709888 (-) False G1883244
TU2154370 other downstream 864326 56700213 ~ 56709786 (-) False G1883244
TU2155344 other upstream 15665 57590044 ~ 57591562 (-) True LOC110503041
TU2155498 other upstream 159978 57734357 ~ 57735498 (-) True G1884227
TU2156522 other upstream 659840 58234219 ~ 58242567 (-) True G1885150
TU2157260 other upstream 1515294 59089673 ~ 59090564 (-) True G1885863
TU2157736 other upstream 1774922 59349301 ~ 59351870 (-) True gpr75

Expression Profile