RNA id: TU2155335



Basic Information


Item Value
RNA id TU2155335
length 232
lncRNA type intronic
GC content 0.57
exon number 1
gene id G1884099
representative True

Chromosome Information


Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 57596546 ~ 57596777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


catcaatgccttcctcttgcaggaactgctgacacactccagccacatgaggtctagcattgtcttgcattaggaggaacccagggccaaccgcaccagcatatggtctcacaaggggtctggggatctcatctcggtacctaatggcagacaggctacctctggcgagcacatagagggctgtgcggcccgccaaagaaatgccaccccacaccatgactgacccaccgcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2155331 lncRNA upstream 3140 57593160 ~ 57593406 (+) True G1884095
TU2155329 lncRNA upstream 6279 57590045 ~ 57590267 (+) True G1884093
TU2155092 lncRNA upstream 34488 57561736 ~ 57562058 (+) True G1883881
TU2155090 lncRNA upstream 37278 57559060 ~ 57559268 (+) True G1883879
TU2155074 lncRNA upstream 100399 57495920 ~ 57496147 (+) True G1883863
TU2155419 lncRNA downstream 75100 57671877 ~ 57676345 (+) True G1884173
TU2155452 lncRNA downstream 108657 57705434 ~ 57724679 (+) False G1884203
TU2155455 lncRNA downstream 108657 57705434 ~ 57712722 (+) True G1884203
TU2155464 lncRNA downstream 116138 57712915 ~ 57720551 (+) True G1884209
TU2155706 lncRNA downstream 289716 57886493 ~ 57886806 (+) True G1884422
XR_005039135.1 mRNA upstream 8051 57570746 ~ 57588495 (+) True LOC110503040
XR_002470415.2 mRNA upstream 45750 57545275 ~ 57550796 (+) True LOC110503013
XM_036960877.1 mRNA upstream 56178 57499694 ~ 57540368 (+) True LOC110503012
XR_005039277.1 mRNA upstream 197109 57379129 ~ 57399437 (+) True LOC118943926
XM_021581367.2 mRNA upstream 753071 56829056 ~ 56843475 (+) True LOC110503004
XM_036959915.1 mRNA downstream 1267838 58864615 ~ 58865931 (+) True LOC118943835
XM_036960895.1 mRNA downstream 1739686 59336463 ~ 59345077 (+) False LOC110503019
XM_021581399.2 mRNA downstream 1739963 59336740 ~ 59345077 (+) True LOC110503019
XM_036959916.1 mRNA downstream 1984322 59581099 ~ 59581875 (+) True LOC118943836
XM_036960899.1 mRNA downstream 2106617 59703394 ~ 59816421 (+) False LOC110503016
TU2154622 other upstream 583328 57012037 ~ 57013218 (+) True G1883457
TU2153723 other upstream 869352 56699238 ~ 56727194 (+) True LOC110503001
TU2153730 other upstream 908626 56673248 ~ 56687920 (+) False LOC110503001
TU2153880 other upstream 1053290 56533617 ~ 56543256 (+) True G1882831
TU2153877 other upstream 1058063 56529795 ~ 56538483 (+) True G1882830
TU2156976 other downstream 1265437 58862214 ~ 58864502 (+) True G1885587
TU2158064 other downstream 2127487 59724264 ~ 59736661 (+) True G1886557
TU2158065 other downstream 2130969 59727746 ~ 59736471 (+) True G1886558
TU2158068 other downstream 2152941 59749718 ~ 59786095 (+) False G1886560
TU2158069 other downstream 2166536 59763313 ~ 59786095 (+) False G1886560

Expression Profile