RNA id: TU2155480


Basic Information

Item Value
RNA id TU2155480
length 1258
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G1884215
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 57705400 ~ 57720592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtagagggagacattagacattctgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattaggcagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtcttgtgtagagggagacataagacagtatgtggtgtagagagagacattagacagtatgtggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtagtgtagaaggagacattagacagtatgtggtgtagagagagacattagacagtatgtagtgtagagggagacattagacagtctgtggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagatggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagagagagacattagacagtctggtgtagagggagacattagacagtctgtggtgtagagggagacattagacagtctggtgtagagggagacattagacattctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctgtagtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagatggagacattagacagtctgtggtgtagagggagacattagacagtatgtggtgtagatggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagatgtagacattagacagtctggtgtagagggagacat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2155443 lncRNA downstream 12267 57692880 ~ 57693133 (-) True G1884195
TU2155395 lncRNA downstream 54772 57650267 ~ 57650628 (-) True G1884154
TU2155375 lncRNA downstream 72183 57632865 ~ 57633217 (-) True G1884136
TU2155370 lncRNA downstream 75869 57627007 ~ 57629531 (-) True G1884132
TU2155365 lncRNA downstream 79490 57625505 ~ 57625910 (-) True G1884129
TU2155493 lncRNA upstream 16673 57729852 ~ 57730072 (-) True G1884223
TU2155499 lncRNA upstream 23484 57736663 ~ 57737105 (-) True G1884228
TU2155510 lncRNA upstream 28696 57741875 ~ 57742106 (-) True G1884239
TU2155595 lncRNA upstream 31925 57745104 ~ 57789252 (-) False G1884321
TU2155596 lncRNA upstream 34191 57747370 ~ 57789252 (-) False G1884321
XM_036960878.1 mRNA downstream 89279 57590001 ~ 57616121 (-) False LOC110503041
XM_036960876.1 mRNA downstream 271944 57389610 ~ 57433456 (-) True LOC110503011
XM_021581375.2 mRNA downstream 271950 57389610 ~ 57433450 (-) False LOC110503011
XM_036960875.1 mRNA downstream 272247 57389610 ~ 57433153 (-) False LOC110503011
XM_036960873.1 mRNA downstream 323749 57339527 ~ 57381651 (-) True LOC110503010
XM_036960890.1 mRNA upstream 315479 58028658 ~ 58372503 (-) False LOC110503044
XM_036960891.1 mRNA upstream 315479 58028658 ~ 58372503 (-) False LOC110503044
XM_036960885.1 mRNA upstream 315479 58028658 ~ 58372504 (-) False LOC110503044
XM_036960886.1 mRNA upstream 315479 58028658 ~ 58372504 (-) False LOC110503044
XM_036960880.1 mRNA upstream 315479 58028658 ~ 58767213 (-) False LOC110503044
TU2155344 other downstream 113838 57590044 ~ 57591562 (-) True LOC110503041
TU2154750 other downstream 588707 57112133 ~ 57116693 (-) True LOC110503007
TU2154376 other downstream 995512 56700213 ~ 56709888 (-) False G1883244
TU2155498 other upstream 21178 57734357 ~ 57735498 (-) True G1884227
TU2156522 other upstream 521040 58234219 ~ 58242567 (-) True G1885150
TU2157260 other upstream 1376494 59089673 ~ 59090564 (-) True G1885863
TU2157736 other upstream 1636122 59349301 ~ 59351870 (-) True gpr75
TU2158377 other upstream 2253183 59966362 ~ 59966666 (-) True G1886825

Expression Profile