RNA id: TU2155479


Basic Information

Item Value
RNA id TU2155479
length 2069
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G1884215
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 57705400 ~ 57720592 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagtctggtgtagatggagacattagacagtctgtggtgtagagggagacattagacattctggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagatggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctgtggtgtagagggagacattagacagtctggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattaggcagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtcttgtgtagagggagacataagacagtatgtggtgtagagagagacattagacagtatgtggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtagtgtagaaggagacattagacagtatgtggtgtagagagagacattagacagtatgtagtgtagagggagacattagacagtctgtggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagatggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattaggcagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtcttgtgtagagggagacataagacagtatgtggtgtagagagagacattagacagtatgtagtgtagagggagacattagacattctgtggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtagtgtagaaggagacattagacagtatgtggtgtagagagagacattagacagtatgtagtgtagagggagacattagacagtctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagatggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtatgtggtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtctggtgtagagggagacattagacagtctgtggtgtagatggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtcttgtgtagagggagacattagacagtatgtggtgtagagagagacattagacagtatgtagtgtagagggagacattagacattctgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgtagagggagacattagacagtatgtggtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2155443 lncRNA downstream 14196 57692880 ~ 57693133 (-) True G1884195
TU2155395 lncRNA downstream 56701 57650267 ~ 57650628 (-) True G1884154
TU2155375 lncRNA downstream 74112 57632865 ~ 57633217 (-) True G1884136
TU2155370 lncRNA downstream 77798 57627007 ~ 57629531 (-) True G1884132
TU2155365 lncRNA downstream 81419 57625505 ~ 57625910 (-) True G1884129
TU2155493 lncRNA upstream 9260 57729852 ~ 57730072 (-) True G1884223
TU2155499 lncRNA upstream 16071 57736663 ~ 57737105 (-) True G1884228
TU2155510 lncRNA upstream 21283 57741875 ~ 57742106 (-) True G1884239
TU2155595 lncRNA upstream 24512 57745104 ~ 57789252 (-) False G1884321
TU2155596 lncRNA upstream 26778 57747370 ~ 57789252 (-) False G1884321
XM_036960878.1 mRNA downstream 91208 57590001 ~ 57616121 (-) False LOC110503041
XM_036960876.1 mRNA downstream 273873 57389610 ~ 57433456 (-) True LOC110503011
XM_021581375.2 mRNA downstream 273879 57389610 ~ 57433450 (-) False LOC110503011
XM_036960875.1 mRNA downstream 274176 57389610 ~ 57433153 (-) False LOC110503011
XM_036960873.1 mRNA downstream 325678 57339527 ~ 57381651 (-) True LOC110503010
XM_036960890.1 mRNA upstream 308066 58028658 ~ 58372503 (-) False LOC110503044
XM_036960891.1 mRNA upstream 308066 58028658 ~ 58372503 (-) False LOC110503044
XM_036960885.1 mRNA upstream 308066 58028658 ~ 58372504 (-) False LOC110503044
XM_036960886.1 mRNA upstream 308066 58028658 ~ 58372504 (-) False LOC110503044
XM_036960880.1 mRNA upstream 308066 58028658 ~ 58767213 (-) False LOC110503044
TU2155344 other downstream 115767 57590044 ~ 57591562 (-) True LOC110503041
TU2154750 other downstream 590636 57112133 ~ 57116693 (-) True LOC110503007
TU2154376 other downstream 997441 56700213 ~ 56709888 (-) False G1883244
TU2155498 other upstream 13765 57734357 ~ 57735498 (-) True G1884227
TU2156522 other upstream 513627 58234219 ~ 58242567 (-) True G1885150
TU2157260 other upstream 1369081 59089673 ~ 59090564 (-) True G1885863
TU2157736 other upstream 1628709 59349301 ~ 59351870 (-) True gpr75
TU2158377 other upstream 2245770 59966362 ~ 59966666 (-) True G1886825

Expression Profile