RNA id: TCONS_00053243


Basic Information

Item Value
RNA id TCONS_00053243
length 4218
RNA type mRNA
GC content 0.52
exon number 16
gene id XLOC_026974
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1619584 ~ 1643101 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGCGGAACTGCAGCCTCTGACCCACATGTGGCCGGACGCCTTTAAATCTATCGAGATTACGAGCACAAGTATTGATGAAAGTGCCAGAAAAGTGTGTATTTCTGCGCTGAGGAGCGACGAGTGTGTTATTATATGATCTGAAGTCTGTGGAGGAACGCGCGCGGAGTAATCGAGGGCTCAGAGCTGCTGTGACCCGGAGCCAAAGATGCAGGAAGGGCCAGGAAAGGgtgGTCAGAACTCGGAGGACACTTTGGAGGATGAAGAGTCTCAGCGCTGCCCGATCTGTCTGAACCGCCCCAGACGGAGCGATCGAGCCGTTCCCGACTGCTGCAGACATGTCTACTGCTCTGCTTGCATCCTTCGCTGGGCACAGATGGTTCAGTCCTGTCCGGTGGACCGCAGACCCTTCAGCGTGATCTTCCTTCAGGGCTCCTCGCAGCAGTGCATTAAGCTTCCTGTGAAGATCAAGCCCAGACTGATGGACAATCGCACGGGCTGCGGTCAGGATGGTCAACGCATGTGTGGAAACTCTGCggcaGAGACCGGAAGTGTGGAGAGAACGCAGGAGAAAAGAGCCAATCCCAAACAGAAATGCCACAGAAAATGTGACTCTGATGCATTCGTGGATTCAAATAAAAAGGCCAGTGGAGACTCATGCCACACTCTTCTGCCCACTCAGCATTTCCACTCATCACAGCAGGGAGCAATGGTCGGCACAGTCATGGCCGGATCGGTTGAGGTTTGTGAGGACGGCGTCCAGTGGAGGAGATTAGAGAGAAAGCGCAGGTTGCATCAAGCGTCTGTTCCTAGTTTTTCTACATGTGTTCCCAGGGTGTCAGTCCGCTCACACCTACTTCTGTCAGCTGTCTCTGCTTCTCTGAATCTGCTGCTTTCAGAACATACAGTTCCTCATGGCATGGTTTGTGCCGTCACCTGCCCCAAAGGTGAGGAAAGAAAAGGCACAAGGGGTTCTGGATCAAAGAGCTCTGTGAAGCCGGCAGAAGCTCCTGCAACCCGGCGGTCCTCCAGACGCAGCCGAGGAGAAGCGGAGGATTCCTCTTCTGCACACTCACAACAGAACGATACTGACAACACCTCACAAACGCTAAATGATACTGCGTCTACAAGCAGAGGCCAGCAAGGGAATAATCCGAGATCTGGAGTGAAGACAAGAGGACGGCCAAAGAAGCTGAAAGTGGAGAAACGCGAGGATGAGGAGCAAGAACCTGAAGCAGAAAATCACAAGGAAGATGGAGCAGCTGAATCCGAAGAATCAAAAACTGACCAGAAAGCAAACTCGGATCAGATTGATGGTGGGCAAGACCCAGTGGACACAAAGGAAAAGATGGAGGAGGAGAATGAGACAAGTCCTTCTGAGAACAAACCTGATGATGCTGATAACCAGGATGAGGAAActgcagaagaagaagaagtggtCACTAAGAATGTGGTTGAAGAAGACGACAATAGCAGGCAAGAAGTGATGACTGATGATGAAGATCAGGTGGAGCTGATGAATGCTTCACCAGAACTGAACCAAGACTGCTCGTCTCCTTCCAGATCTTTAGAACCACAGGAGTCTCCGTCTGATTCCCAGGATGCTGTTTTATCTTTTAAAGAGCAACTGACAGCTGAATCACCTACAGATGCTTCAGATCAGGATTTGGATCTGAAACCAGAGCTTGACAGCACAGAAGACAATCCTGAAAAGCAGGATTCCAGTAGCTTTCCAGATCTCCAAGACATTGCAGATCCGAAACCAGAGCCTGACACCACAGAGGAGGCTTACACACAAGACTCCAGTAACCTTCCAGCTCTACAAGAGATTGTGGATTTGATACCAGAGCCTGACACCACAGAGGAGATGGCCAATCAAGATCCTGCTGAGAAGATAGAGAGCTCTAAAGAATCGAAAACCTCGGATAAGAAGGAGGGACGATCCCGCAGGTCCCGCTTCCACTCATCTTCAACCACTTGGTCTCCGAACCGGGAGTCTAGGAATGAACGCAGATCAAGGTCTCGATCCCGGGACCGAAGCCACAAAACTCGCTCCACATCTCGAAACCGTGACCACCAAGAGGAAGAACGGGACAGTCGGAGAAACCGTAGTCGTAGCCGAAGCAGAGAGCGTAGCCGCAGACGGAGGAGTCGCTCTAGGTCCAGGAACAGGAGCAGACCTGGACGCCGCAGCCCGTCCCAGGAGCGTGCAGACCACGGAGGACACTCTCCCCGAAAACGAGACTCCTGGGGTGGAGGAGGAGAAGGATGGAGAGGCAGAGGTGGTGGACGAGGATTTCGCAATTCCAACTGGAGGAATAACACTGAAAAACCTGCACATTTCTCAACTAGAGACCCTGTTTCTTCCGATAATGGAAACTTCCATGAATCCTCACCTGATCGAGGGAGGAACGAGAACCCTGATTGGGTGAGAGAAAGGGAGAGGGAGAGGAGTTGGATGGATGCTGATAACCGTGGGCGAGAGCCGGCGAGAAGAGAGGAGAATTTGGGAGATGGAGACACCTGGTCTCGGGGCGGCTGGAGTGCTGGACGTGGCAGAGGAGGCACACACTGGGCGTCCAGCCAGCAGGGGGAGCCAGGAGATAACTGGAGGCAGCGCAATTCTTTCTCAGGGACCACTAATAATGCAGATTCATACAATCGCTTTAATGATAGCAGAGCTGGAGGGAAGAGGAAAGAGTCTGAAGGTGCAGAGGCTCCACTGGATCGCTCCGGGTGGTCGTCGGCGTCGAGTTGGGCAGTGCGGCGAACTCTTCCCGCTGATGTGCAGAACTACTACTCGCGCAGAGATCGAGGTGGTGGCGGCGGTGGAAACAACATCTGGAACAAACAAGAGGAGGATCAGAGCGCACCGACTGTCCCAAaacaagcagATCCCCCACAGAATGAGCCAAGTGCGCCGCTGCCAACTGAGGCTGTGCCAGCCATGCCTCCGCCCCTGCTGCCGCATCAGATGGGTGTGATGGGGGTCATGCGCTTCCCCATGGGCCCCGCTCCACTGCTCCAGAGGCCTCCCACCGCAGGTCTGCAGGCTCCACCACAGTTCAGCCTGCCTCCTCCAGTACCAGTGCAGCTCCACCAGGCTGGCCCGCTCATGCAGGTGCCCTCTATAGCAGTGCAGGCTCTTCCTCCACCGCCTCCGCCTCCTCCACCTGTGCAGCAGGGCGGATTTACTGTGGTGCCGCCCGAAAGCCACCCATCTCAGCAGGCGATGCCCATTTTTCCTGCGCCAGTCAAAATGTCTTTCAAACCTGTGCCGACCAAAGTGGTTTGTgggcctcctcctcctcctgctgtgCCGGTCAGTGCGGTGCAGCCATCCTCCACCACCTCCAGCAGCTCCAGCACGCAGCCCAAAGCCCACGCAGACAGCTCCAAGAAGGAGAAGGAGAAGAAACTGCAGATTCAGGAGCGCGCCGTCAATGAGGTGAAAGCAGCCATTAAGCCATATTATCAGAAGAACGAAATCAACAAGGACGAATATAAAGAGATCGTGCGCAAAGCTGTGGAGAAGGTGTGTCACAGCAAGAGTGGCGAGGTGAACGCAGACAAGGTGGCCACTCTGGTGAAGGCGTATGTGGACAAATACAAACACATCCGCAAGAGCAAAACTGAAAAGAGCTGAGGACGGCGGAGCTGCTGCTGACGCAACAAGTGCAATTCCTCCACAGCCGCTCTTAACACATTTACATACGACAATGAAGATTTTTCTAGAGatgatattttgtttaatttggaTTTGATATAGTGCAAATGCCCTTTATTGGATTATGtctgcgcgcgcgtgtgtgtgtgtgtgtgtgagtgcagagGGGGTTAAAAGTCTGTAATGGTGTCGCTATTAATTGCATTTTGCTTCTAAGTTTAGATGATGATCAAATGATTCATTGGTACGTCtgtatctctctctttctccagaTCTTCAACATAAAGACTGTCATTTTCCCCCTTTTAGAGGCAGCCCAGCAATCCATGTGCATTAGCTTTATTAATCGCTGCAGAttccgagtgtgtgtgtgtttgattatgtGTGTTTGAGATCTTAAGTGGACAGAACAACGGGTAGTTTTGTCGGTCGGTGAGCTGAGATTTTGTTGTCATATATCCAGGTTTAAAGTCCTGTACTTCTGTTTTCTGCAGTTCAATCACTGTGTCTGTTTATCTTCCCAGAAGCAATGAAATAAAGCAGCTCTCTGAA

Function

GO:

id name namespace
GO:0000245 spliceosomal complex assembly biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041210-22 Predicted to enable metal ion binding activity. Predicted to be involved in spliceosomal complex assembly. Orthologous to human SCAF11 (SR-related CTD associated factor 11).

Ensembl:

ensembl_id ENSDART00000148486

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053242 lncRNA upstream 4655 1613617 ~ 1614929 (+) True XLOC_026973
TCONS_00053241 lncRNA upstream 8371 1605666 ~ 1611213 (+) False XLOC_026973
TCONS_00057503 lncRNA upstream 25772 1576850 ~ 1593812 (+) False XLOC_026972
TCONS_00053239 lncRNA upstream 25772 1576889 ~ 1593812 (+) True XLOC_026972
TCONS_00053237 lncRNA upstream 79784 1530287 ~ 1539800 (+) False XLOC_026971
TCONS_00057504 lncRNA downstream 43672 1684028 ~ 1685509 (+) False XLOC_026975
TCONS_00053245 lncRNA downstream 44665 1685021 ~ 1685345 (+) True XLOC_026975
TCONS_00057505 lncRNA downstream 46130 1686486 ~ 1689357 (+) False XLOC_026976
TCONS_00057506 lncRNA downstream 46186 1686542 ~ 1689357 (+) True XLOC_026976
TCONS_00057507 lncRNA downstream 92471 1732827 ~ 1735224 (+) False XLOC_026978
TCONS_00053240 mRNA upstream 1687 1600034 ~ 1617897 (+) False XLOC_026973
TCONS_00053238 mRNA upstream 53012 1530287 ~ 1566572 (+) True XLOC_026971
TCONS_00053236 mRNA upstream 80921 1516716 ~ 1538663 (+) False XLOC_026971
TCONS_00053235 mRNA upstream 153189 1461079 ~ 1466395 (+) True XLOC_026970
TCONS_00053232 mRNA upstream 334912 1146346 ~ 1284672 (+) False XLOC_026965
TCONS_00053246 mRNA downstream 82543 1722899 ~ 1730920 (+) False XLOC_026977
TCONS_00053248 mRNA downstream 117106 1757462 ~ 1759555 (+) True XLOC_026979
TCONS_00053249 mRNA downstream 120673 1761029 ~ 1771308 (+) False XLOC_026980
TCONS_00053258 mRNA downstream 419336 2059692 ~ 2062435 (+) True XLOC_026989
TCONS_00053259 mRNA downstream 452327 2092683 ~ 2099581 (+) True XLOC_026990
TCONS_00053233 other upstream 427940 1191527 ~ 1191644 (+) True XLOC_026966
TCONS_00053221 other upstream 1065200 554267 ~ 554384 (+) True XLOC_026949
TCONS_00053220 other upstream 1199810 419659 ~ 419774 (+) True XLOC_026948
TCONS_00053216 other upstream 1221660 391376 ~ 397924 (+) True XLOC_026944
TCONS_00053247 other downstream 82547 1722903 ~ 1725794 (+) True XLOC_026977
TCONS_00053253 other downstream 297166 1937522 ~ 1943586 (+) False XLOC_026986
TCONS_00053254 other downstream 297564 1937920 ~ 1942155 (+) False XLOC_026986
TCONS_00053255 other downstream 310493 1950849 ~ 1951496 (+) False XLOC_026987
TCONS_00053256 other downstream 317884 1958240 ~ 1974894 (+) False XLOC_026987

Expression Profile

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