RNA id: TU2158600


Basic Information

Item Value
RNA id TU2158600
length 1120
lncRNA type intronic
GC content 0.42
exon number 2
gene id G1887014
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 60308013 ~ 60309864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttgcaaacatttctaaaaatatgttttcattttgtcatgaggttgtgtgtgtagatgggtgagaaacacatgtatttcatccattttgtcatgaggttgtgtgtgtagatgggtgagaaacacatgtatttcatccattttgtcatgaggttgtgggtgtagatgggtgagaaacacacgtatttaatccattttgtcatgaggttgtgtgtgtagatgggtgagaaacatgtatttcatccattttgtcatgaggttgtgtgtgtagatgggtgagaaacacgtgtatttcatccattttgtcatgaggttgtgtgtgtagatgggtgagaaacacatgtatttcatccattttgtcatgaggttgtgtgtgtagatgggtgagaaacacatgtatttcatccattttgtcatgaggttgtgggtgtagatgggtgagaaacacatgtatttcatccattttgtcatgaggttgtgggtgtagatgggtgagaaacacATGTTGAATCCAtgttgaatccaggctgtaacaacatgtggaataggtCAGGAGGTATGAATACGTTGTGAAGACAGAGTATAGAAAGAGTCTGGCTCTGTTGGGGTCATCTATAGGCCTGTAGTTTAGAGTGGAGACAGGGGACAGACAGCCTCGTAAGAAGAGAACAGTCGGTGTAGGTTTACTAAAGGAAAGTAAAACGAGCTTGAACTTTTCATGAATGAATAATGAGCACTTTCTTTAACACTCACTCGTGTGTTAAACTCACATTTAAAGTATTGATGGGTAAAGaaagaccagggcccatattcaaACAAACATgtactgatctgggatcagttctCTCTTTacgatcataatgaataagattacacgACAACCTgggtggacctgatcctagaacagcagtcctactctgagactgTCTGCTGGTCAGTGCTCTGCTCAGGACAGGATTACAACATGCGGTCTCCTTTTGAATGTACATTTCCCAGATGTGAAAGAGATGTTTTGCTGGTATAACCTGACCGCTAGGCTGATTCAGAGCCGTGGCTGGTATAACCTGACCACTAGGCTGATTCAGAGCCGTGGCTGGTATAACCTGACCACTAGGCTGATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2158591 lncRNA upstream 11902 60295341 ~ 60296111 (+) True G1887005
TU2158536 lncRNA upstream 72898 60232936 ~ 60235115 (+) True G1886970
TU2158533 lncRNA upstream 75993 60231734 ~ 60232020 (+) True G1886969
TU2158528 lncRNA upstream 88393 60219294 ~ 60219620 (+) True G1886967
TU2158513 lncRNA upstream 116915 60190861 ~ 60191098 (+) True G1886956
TU2158667 lncRNA downstream 158002 60467866 ~ 60468690 (+) True G1887073
TU2158703 lncRNA downstream 236454 60546318 ~ 60546736 (+) True G1887108
TU2158960 lncRNA downstream 317917 60627781 ~ 60628107 (+) True G1887289
TU2158962 lncRNA downstream 319266 60629130 ~ 60629444 (+) True G1887291
TU2158970 lncRNA downstream 322058 60631922 ~ 60632223 (+) True G1887295
XM_036960911.1 mRNA upstream 133884 60012705 ~ 60174129 (+) False slc35f3b
XM_036960910.1 mRNA upstream 133885 60012705 ~ 60174128 (+) False slc35f3b
XM_036960912.1 mRNA upstream 133885 60085387 ~ 60174128 (+) False slc35f3b
XM_036960909.1 mRNA upstream 335479 59962215 ~ 59972534 (+) True LOC110503042
XM_021581394.2 mRNA upstream 441238 59847130 ~ 59866775 (+) False LOC110503015
XM_036959918.1 mRNA downstream 15425 60325289 ~ 60371061 (+) True col9a1b
XM_036960939.1 mRNA downstream 336202 60646066 ~ 60907352 (+) False LOC110516668
XM_036960940.1 mRNA downstream 336202 60646066 ~ 60907352 (+) False LOC110516668
XM_036960941.1 mRNA downstream 336202 60646066 ~ 60907352 (+) True LOC110516668
XM_036960956.1 mRNA downstream 1183793 61493657 ~ 61518217 (+) False LOC118943928
TU2158232 other upstream 137233 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 520024 59783986 ~ 59787989 (+) True G1886561
TU2158068 other upstream 521918 59749718 ~ 59786095 (+) False G1886560
TU2159617 other downstream 966911 61276775 ~ 61277763 (+) True G1887835
TU2160160 other downstream 1616882 61926746 ~ 61927857 (+) True G1888298
TU2160531 other downstream 2254661 62564525 ~ 62565083 (+) True G1888544

Expression Profile