RNA id: TU2158839


Basic Information

Item Value
RNA id TU2158839
length 1830
lncRNA type antisense_over
GC content 0.43
exon number 7
gene id G1887200
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 60365612 ~ 60371169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctccaaacCCTGAGAGGAtttcacatagaaatagaatcgcATTGGAATTGCCATTCTAGTGACTTCATTTCTATGGGTGGTGACATAGTACTCAACAGTGAACAGAATACTGTGAAAGGGAATATTCCATTTATTTTCAAAATAATCATCTCTCAGAATCCTCCTCACACTGTACAATGAGAACAAACCTCACATTCAATCATTAGGATAGTTATTTTTTGTAGGAAATATAATTAACCACAATTGAAAACAATTTACAGAGATGTACAGCGCATATGGAAGGTCCGTCAGTCAGTGTGGCTTGGTGTCAGTCCTATCTTCTATCTCTTTATTTAGATTTCTGGAAGGAAAGCAGGGGGCTGGAAATACCCCAGGTACATTCTGTACAAACTGATATCACTGTTTTTCACCAGGTCTATCTTTGGTAATTGATACTTCAATATAGAACATGATGCAGTAcattacaaatacaaaaaaaatacactttGGGCTAAAGGCAATCCTGGTATTGCTTTATGGTTTTACTTTATTGGGGAGGAATTAGCGTGATTTGATGTGGATGGAGCCGCTGCTGAAATCAACATGTTGGCTTCAGTATACAGCTGTttcagtgagaggagaggaggaaagggaacaTACAAATACAGCCAGATGGTTAATAAGGACAGGTAAAATGTCTGGTGGTTAATAAGGACAGGTGCATGTCTGGTGGTTATAAAGGACAGTTGATTTGTCTGGTGGTTATTAAGGACAGGTGAATTGTCTGGTGGTTATTAAGGACAGGTGAATTGTCTGGTGGTTATTAAGGACAGGTGAATTGTCTGGTGGTTATTAAGGACAGGTGATTGTCTGGTGGTTATTAAGGACAGGTAATTTGTCTGGTGGTTATTAAGGACAGGTAATTTGTCTGGTGGTTATTAAGGACAGGTGAATTGTCCGGTGGTTATTAAGGACAGATATTTGTCTGGTGGTTATTAAGGACATCTAGGTTTACAGGGACGGTGGAATAAAAACAAATATAGTCTTCAAAACATGACTATCTTAAAATAGAGCACCCACTTCTgaaaacaacaaaagaaaaatAAAATCTGTCATGTAAAAAACTGTTACACGTCCAAACAGGTTCAGGATTATTATTGTTTTGCAACAAAATACTTAGTTTTGTTTCGCATTTGTGGAAGTGGAAGACTCCTTCATATCCGATAGAGATCTGGCTAGCACAGAACACTCTCACAAAACACTGCAGATACGTTAGAATGGACCACTTTACAGCAACAGCCTTCAGAGTAGAGAGGCTGTGAGGATGTTGTGTGCTCCCAGGGTTGGGGTGGGAGAGCTGTCCATCTGCCATcttagtctctgtctctgtctctacccctctctgGGTGTTGGGCAGTGGAAGCTGGTGAAGGGGGGATGGGTCATAGTGATGGCTctaatggaataaatggaacagaaTCCAAGGTGTTTGAAACTtttccattcattccattacaGCCATTACATCCAGTCCTCAGATTTAAAGtgacaccagcctccactgggtGGTGGCTCTAGTTTCTAGTTCCCTCCGGGCCCTTGATGCTGGTGTCAATGTCCCCCGGTCTGAGGTTGCAGGACGATGGGTCGCAGTAGCCGTTGGGGCCAGCATTACCAGGAGGCCCAGGTACACCAGCCTGGCCAGGAACACCTGGAGGTCCTCTCTCGCCGTCACGTCCCTCCTGGCCGTAACCAGGCTTTCCGGGCTCACCTGTGGAGTTAGAGTTAGAGAAGAGTTAGCTAAACCATCTTACACCaaagtagaacatccagaacctCAAAGACTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2158826 lncRNA downstream 5541 60362611 ~ 60363435 (-) True G1887196
TU2158794 lncRNA downstream 95652 60273040 ~ 60273324 (-) True G1887170
TU2158741 lncRNA downstream 100648 60266683 ~ 60268328 (-) True LOC110514479
TU2158752 lncRNA downstream 136614 60232135 ~ 60232362 (-) True G1887152
TU2158751 lncRNA downstream 136927 60231642 ~ 60232049 (-) True G1887151
TU2158857 lncRNA upstream 280 60371449 ~ 60375586 (-) True LOC110515674
TU2158963 lncRNA upstream 257849 60629018 ~ 60629333 (-) True G1887292
TU2158980 lncRNA upstream 269850 60641019 ~ 60641221 (-) True G1887305
TU2158983 lncRNA upstream 273773 60644942 ~ 60645389 (-) True G1887308
TU2159081 lncRNA upstream 277355 60648524 ~ 60649115 (-) False G1887394
XM_036960925.1 mRNA downstream 48134 60266566 ~ 60320842 (-) False LOC110514479
XM_036960926.1 mRNA downstream 48134 60266566 ~ 60320842 (-) False LOC110514479
XM_036960927.1 mRNA downstream 48134 60266566 ~ 60320842 (-) False LOC110514479
XM_036960924.1 mRNA downstream 48135 60266566 ~ 60320841 (-) False LOC110514479
XM_036960935.1 mRNA upstream 277 60371446 ~ 60626193 (-) False LOC110515674
XM_036960929.1 mRNA upstream 277 60371446 ~ 60626594 (-) False LOC110515674
XM_036960930.1 mRNA upstream 277 60371446 ~ 60626594 (-) False LOC110515674
XM_036960931.1 mRNA upstream 277 60371446 ~ 60626594 (-) False LOC110515674
XM_036960932.1 mRNA upstream 277 60371446 ~ 60626594 (-) False LOC110515674
TU2158391 other downstream 371913 59995384 ~ 59997063 (-) True G1886838
TU2158377 other downstream 402310 59966362 ~ 59966666 (-) True G1886825
TU2157736 other downstream 1017106 59349301 ~ 59351870 (-) True gpr75
TU2157260 other downstream 1278412 59089673 ~ 59090564 (-) True G1885863
TU2156522 other downstream 2126409 58234219 ~ 58242567 (-) True G1885150
TU2159143 other upstream 402941 60774110 ~ 60825790 (-) True G1887449
TU2159535 other upstream 778887 61150056 ~ 61151170 (-) False G1887761
TU2159536 other upstream 778887 61150056 ~ 61151170 (-) False G1887761
TU2159537 other upstream 778887 61150056 ~ 61151170 (-) False G1887761
TU2159538 other upstream 779357 61150526 ~ 61151170 (-) True G1887761

Expression Profile