RNA id: TU2158983


Basic Information

Item Value
RNA id TU2158983
length 448
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1887308
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 60644942 ~ 60645389 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggctacttaatgttagatcccttacttcaaaggcaattatagtcaatgaactaatcactgatcataatcttgatgtgattggcctgactgaaacatggcttaagcctgatgaatttactgtgttaaatgaggcctcacctcctggttacactagtgaccatgtcccccgtgcatcccgcaaaggcggaggtgttgctaacatttacgatagcaaatttcaatttacaaaaaaaaaaaaaaatgacgttttcgtcttttgagcttctagtcatgaaatctatgcagcctactcaatcactttttatagctactgtttacaggcctcctgggccatatacagcgttcctcactgagttccctgaattcctatcggaccttgtagtcatagcggataatattctaatctttggtgactttaatattcacatggaaaagtccacagaccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2158980 lncRNA downstream 3721 60641019 ~ 60641221 (-) True G1887305
TU2158963 lncRNA downstream 15609 60629018 ~ 60629333 (-) True G1887292
TU2158857 lncRNA downstream 269356 60371449 ~ 60375586 (-) True LOC110515674
TU2158847 lncRNA downstream 273773 60368976 ~ 60371169 (-) False G1887200
TU2159081 lncRNA upstream 3135 60648524 ~ 60649115 (-) False G1887394
TU2159082 lncRNA upstream 3439 60648828 ~ 60649794 (-) True G1887394
TU2159084 lncRNA upstream 8943 60654332 ~ 60655363 (-) True G1887395
TU2159137 lncRNA upstream 112973 60758362 ~ 60775659 (-) True G1887444
TU2159176 lncRNA upstream 260319 60905708 ~ 60906911 (-) True G1887474
XM_036960934.1 mRNA downstream 11648 60371446 ~ 60633294 (-) False LOC110515674
XM_036960930.1 mRNA downstream 18348 60371446 ~ 60626594 (-) False LOC110515674
XM_036960942.1 mRNA upstream 294090 60939479 ~ 61274614 (-) False adgrb3
XM_036960951.1 mRNA upstream 294090 60939479 ~ 61274616 (-) False adgrb3
XM_036960949.1 mRNA upstream 294090 60939479 ~ 61274617 (-) False adgrb3
XM_036960948.1 mRNA upstream 295028 60940417 ~ 61274613 (-) False adgrb3
XM_036960952.1 mRNA upstream 295028 60940417 ~ 61274613 (-) False adgrb3
TU2158391 other downstream 647879 59995384 ~ 59997063 (-) True G1886838
TU2158377 other downstream 678276 59966362 ~ 59966666 (-) True G1886825
TU2157736 other downstream 1293072 59349301 ~ 59351870 (-) True gpr75
TU2157260 other downstream 1554378 59089673 ~ 59090564 (-) True G1885863
TU2156522 other downstream 2402375 58234219 ~ 58242567 (-) True G1885150
TU2159143 other upstream 128721 60774110 ~ 60825790 (-) True G1887449
TU2159535 other upstream 504667 61150056 ~ 61151170 (-) False G1887761
TU2159536 other upstream 504667 61150056 ~ 61151170 (-) False G1887761
TU2159537 other upstream 504667 61150056 ~ 61151170 (-) False G1887761
TU2159538 other upstream 505137 61150526 ~ 61151170 (-) True G1887761

Expression Profile