RNA id: TU2159676


Basic Information

Item Value
RNA id TU2159676
length 713
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G1887883
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61313472 ~ 61317546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATAGATATGACCAGTTCAATAGTTAGTTTAGGTAATAATCCAATGGAAGGTAGTCTACAGAGGAAAACCCAAAACATTAGTTAATAGTTCACAGAAAGAAAACTTCTCTTGATGATCAATACCATATCCTTTAAACAAGTATTATCTTGGTGATCAATACAATATCCCTTAAACAAGTCTTCTCTTGGTGTTCAATACAATGTCCCTTAAACAAGTATTCTCTTGGTGATCAATACAATGTCCATTAAACAAGTCTTCTCTTGGTGATCAATACAATGTCCCTTAAACAAGTCTTCTCTTGGTGATCAATACAATATCCCTTAAACAAGTCTTCTCTTGGTGTTCAATACaatattgtcatgtactgtcatgttgtgtcttgtttctgtcctttcccttcaccctgtctccctctgctggtcgttgttaggttaccttttctccccctcttttccccagctgtgccttgtctcctcctaactacctcgttcaccccttttcccacctgttccctttttccctctgattaggtccctatatctctctctgtttctgctcctgtctttgtcggattcttgtttgtgttgttcatgcctgaaccagactatcgtcatgtttgctgcaaccttgtcctgtcctgtcggaacctgccggtccatctgagcctacgttttgttttgttattaaagaagctctgtttacgttaattcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2159668 lncRNA upstream 3694 61309578 ~ 61309778 (+) True G1887876
TU2159639 lncRNA upstream 20513 61290343 ~ 61292959 (+) False G1887853
TU2159641 lncRNA upstream 20513 61290343 ~ 61292959 (+) False G1887853
TU2159638 lncRNA upstream 20513 61291963 ~ 61292959 (+) True G1887853
TU2159642 lncRNA upstream 21653 61290343 ~ 61291819 (+) False G1887853
TU2159696 lncRNA downstream 19586 61337132 ~ 61337961 (+) True G1887899
TU2159723 lncRNA downstream 43596 61361142 ~ 61361611 (+) False G1887923
TU2159724 lncRNA downstream 43596 61361142 ~ 61361611 (+) True G1887923
TU2159729 lncRNA downstream 47886 61365432 ~ 61365730 (+) True G1887928
TU2159781 lncRNA downstream 100086 61417632 ~ 61417911 (+) True G1887968
XM_036960939.1 mRNA upstream 406120 60646066 ~ 60907352 (+) False LOC110516668
XM_036960940.1 mRNA upstream 406120 60646066 ~ 60907352 (+) False LOC110516668
XM_036960941.1 mRNA upstream 406120 60646066 ~ 60907352 (+) True LOC110516668
XM_036959918.1 mRNA upstream 942411 60325289 ~ 60371061 (+) True col9a1b
XM_036960912.1 mRNA upstream 1139344 60085387 ~ 60174128 (+) False slc35f3b
XM_036960956.1 mRNA downstream 176111 61493657 ~ 61518217 (+) False LOC118943928
XM_036960955.1 mRNA downstream 176111 61493657 ~ 61522049 (+) True LOC118943928
XR_005039279.1 mRNA downstream 223606 61541152 ~ 61555170 (+) False LOC118943929
XM_036960957.1 mRNA downstream 240465 61558011 ~ 61575674 (+) True LOC110532895
XR_005039280.1 mRNA downstream 288478 61606024 ~ 61614271 (+) True LOC110522442
TU2159617 other upstream 35709 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1142692 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 1525483 59783986 ~ 59787989 (+) True G1886561
TU2158069 other upstream 1527377 59763313 ~ 59786095 (+) False G1886560
TU2160160 other downstream 609200 61926746 ~ 61927857 (+) True G1888298
TU2160531 other downstream 1246979 62564525 ~ 62565083 (+) True G1888544

Expression Profile