RNA id: TU2159696


Basic Information

Item Value
RNA id TU2159696
length 600
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G1887899
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61337132 ~ 61337961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGAGGTTAACACCACTGTACactgaggttaacaccactgTACACAGTATACTGAAGTTAACACCACTACACAGGACACTGAGGTTAACACCACTTTACACAGTACACTTAGGTTAACACCACTGTACACAGTATactgaggttaacaccactgtcactgtacacagtatactgaggttaacaccactgtcactgtacacagtatactgaggttaacaccactgtacactgaggttaacaccactgtacactgaggttaacaccactttacacagtatactgaggttaacaccactgtacacagtatactgaggttaacaccactgtcactgtacacagtatactgaggttaacaccactgtacactgaggttaacaccactgTACACTGAGGTTAACACCACTACACAGTATACTGAGGTTAACACCACTTTACACAGTACactgaggttaacaccactgtacacagtatactgaggttaacaccactgTACACAGGACACCGAGgttaacaccactgTACACTGAGGTTAACACCACTTTACACAGTACactgaggttaacaccactgtacacagtatactgaggttaacaccactgT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2159676 lncRNA upstream 19586 61313472 ~ 61317546 (+) True G1887883
TU2159668 lncRNA upstream 27354 61309578 ~ 61309778 (+) True G1887876
TU2159639 lncRNA upstream 44173 61290343 ~ 61292959 (+) False G1887853
TU2159723 lncRNA downstream 23181 61361142 ~ 61361611 (+) False G1887923
TU2159724 lncRNA downstream 23181 61361142 ~ 61361611 (+) True G1887923
TU2159729 lncRNA downstream 27471 61365432 ~ 61365730 (+) True G1887928
TU2159781 lncRNA downstream 79671 61417632 ~ 61417911 (+) True G1887968
TU2159782 lncRNA downstream 80099 61418060 ~ 61418334 (+) True G1887969
XM_036960939.1 mRNA upstream 429780 60646066 ~ 60907352 (+) False LOC110516668
XM_036960940.1 mRNA upstream 429780 60646066 ~ 60907352 (+) False LOC110516668
XM_036960941.1 mRNA upstream 429780 60646066 ~ 60907352 (+) True LOC110516668
XM_036959918.1 mRNA upstream 966071 60325289 ~ 60371061 (+) True col9a1b
XM_036960912.1 mRNA upstream 1163004 60085387 ~ 60174128 (+) False slc35f3b
XM_036960956.1 mRNA downstream 155696 61493657 ~ 61518217 (+) False LOC118943928
XM_036960955.1 mRNA downstream 155696 61493657 ~ 61522049 (+) True LOC118943928
XR_005039279.1 mRNA downstream 203191 61541152 ~ 61555170 (+) False LOC118943929
XM_036960957.1 mRNA downstream 220050 61558011 ~ 61575674 (+) True LOC110532895
XR_005039280.1 mRNA downstream 268063 61606024 ~ 61614271 (+) True LOC110522442
TU2159617 other upstream 59369 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1166352 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 1549143 59783986 ~ 59787989 (+) True G1886561
TU2158069 other upstream 1551037 59763313 ~ 59786095 (+) False G1886560
TU2160160 other downstream 588785 61926746 ~ 61927857 (+) True G1888298
TU2160531 other downstream 1226564 62564525 ~ 62565083 (+) True G1888544

Expression Profile