RNA id: TU2159723


Basic Information

Item Value
RNA id TU2159723
length 415
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G1887923
representative False

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61361142 ~ 61361611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acccctactgcctctgatctggcggacttactaaacagagaacatccctggtcacccctactgcctctgatctggcggactcactaaacagagaacatccctggttatccctactgcctctgatctggaggactcactaaacagagaacatccctggtcacccctactgcctctgatctggaggactcactaaacagagaacatccctggtcatcactactgcctctgatctggcagactcactaaacagagaacatccctggtcatctactgcctctgatctggcagactcactaaacagagaacatccctggttatccctactgcctctgatctggcggactcactaaacagagaacatccctggtcacccctactgcctctgatctggtggactcactaaacagagaacatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2159696 lncRNA upstream 23181 61337132 ~ 61337961 (+) True G1887899
TU2159676 lncRNA upstream 43596 61313472 ~ 61317546 (+) True G1887883
TU2159668 lncRNA upstream 51364 61309578 ~ 61309778 (+) True G1887876
TU2159641 lncRNA upstream 68183 61290343 ~ 61292959 (+) False G1887853
TU2159729 lncRNA downstream 3821 61365432 ~ 61365730 (+) True G1887928
TU2159781 lncRNA downstream 56021 61417632 ~ 61417911 (+) True G1887968
TU2159782 lncRNA downstream 56449 61418060 ~ 61418334 (+) True G1887969
TU2159789 lncRNA downstream 60794 61422405 ~ 61422957 (+) True G1887976
TU2159793 lncRNA downstream 62166 61423777 ~ 61424338 (+) True G1887979
XM_036960939.1 mRNA upstream 453790 60646066 ~ 60907352 (+) False LOC110516668
XM_036960940.1 mRNA upstream 453790 60646066 ~ 60907352 (+) False LOC110516668
XM_036960941.1 mRNA upstream 453790 60646066 ~ 60907352 (+) True LOC110516668
XM_036959918.1 mRNA upstream 990081 60325289 ~ 60371061 (+) True col9a1b
XM_036960912.1 mRNA upstream 1187014 60085387 ~ 60174128 (+) False slc35f3b
XM_036960956.1 mRNA downstream 132046 61493657 ~ 61518217 (+) False LOC118943928
XM_036960955.1 mRNA downstream 132046 61493657 ~ 61522049 (+) True LOC118943928
XR_005039279.1 mRNA downstream 179541 61541152 ~ 61555170 (+) False LOC118943929
XM_036960957.1 mRNA downstream 196400 61558011 ~ 61575674 (+) True LOC110532895
XR_005039280.1 mRNA downstream 244413 61606024 ~ 61614271 (+) True LOC110522442
TU2159617 other upstream 83379 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1190362 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 1573153 59783986 ~ 59787989 (+) True G1886561
TU2158069 other upstream 1575047 59763313 ~ 59786095 (+) False G1886560
TU2160160 other downstream 565135 61926746 ~ 61927857 (+) True G1888298
TU2160531 other downstream 1202914 62564525 ~ 62565083 (+) True G1888544

Expression Profile