RNA id: TU2159789


Basic Information

Item Value
RNA id TU2159789
length 232
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1887976
representative True

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 61422405 ~ 61422957 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctactactactactgctgctgctacaactagtacaactactgcagctgctactactagtactactattactgctactactactactactactactgctgctgcaactagtacaactactgctgctactactagtacaacaactactactactactgctgctgctacaactactactactactgctgctgctacaactagtacaactactgctgctgctactactagtactac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2159782 lncRNA upstream 4071 61418060 ~ 61418334 (+) True G1887969
TU2159781 lncRNA upstream 4494 61417632 ~ 61417911 (+) True G1887968
TU2159729 lncRNA upstream 56675 61365432 ~ 61365730 (+) True G1887928
TU2159723 lncRNA upstream 60794 61361142 ~ 61361611 (+) False G1887923
TU2159724 lncRNA upstream 60794 61361142 ~ 61361611 (+) True G1887923
TU2159793 lncRNA downstream 820 61423777 ~ 61424338 (+) True G1887979
TU2159800 lncRNA downstream 3610 61426567 ~ 61426796 (+) True G1887983
TU2159802 lncRNA downstream 5334 61428291 ~ 61428492 (+) True G1887985
TU2159880 lncRNA downstream 94382 61517339 ~ 61517574 (+) True G1888060
TU2159899 lncRNA downstream 118253 61541210 ~ 61541427 (+) True LOC118943929
XM_036960939.1 mRNA upstream 515053 60646066 ~ 60907352 (+) False LOC110516668
XM_036960940.1 mRNA upstream 515053 60646066 ~ 60907352 (+) False LOC110516668
XM_036960941.1 mRNA upstream 515053 60646066 ~ 60907352 (+) True LOC110516668
XM_036959918.1 mRNA upstream 1051344 60325289 ~ 60371061 (+) True col9a1b
XM_036960912.1 mRNA upstream 1248277 60085387 ~ 60174128 (+) False slc35f3b
XM_036960956.1 mRNA downstream 70700 61493657 ~ 61518217 (+) False LOC118943928
XM_036960955.1 mRNA downstream 70700 61493657 ~ 61522049 (+) True LOC118943928
XR_005039279.1 mRNA downstream 118195 61541152 ~ 61555170 (+) False LOC118943929
XM_036960957.1 mRNA downstream 135054 61558011 ~ 61575674 (+) True LOC110532895
XR_005039280.1 mRNA downstream 183067 61606024 ~ 61614271 (+) True LOC110522442
TU2159617 other upstream 144642 61276775 ~ 61277763 (+) True G1887835
TU2158232 other upstream 1251625 60170348 ~ 60170780 (+) False slc35f3b
TU2158073 other upstream 1634416 59783986 ~ 59787989 (+) True G1886561
TU2158069 other upstream 1636310 59763313 ~ 59786095 (+) False G1886560
TU2160160 other downstream 503789 61926746 ~ 61927857 (+) True G1888298
TU2160531 other downstream 1141568 62564525 ~ 62565083 (+) True G1888544

Expression Profile