RNA id: TCONS_00057517


Basic Information

Item Value
RNA id TCONS_00057517
length 1497
lncRNA type inter_gene
GC content 0.47
exon number 7
gene id XLOC_026986
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1936477 ~ 1952999 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATCTGTGACGATCCTCCTCGCTGGATGTCTGATACAAGGTCCCGCTCATAgTGTTTTATGTGGCTTCAGTATCAGTCTGCCGGAGAGAGTAGAAGCTCTAGAAGGATCCTGTGTTTTTATATCCTGCACATTCCAGATTGATCAAACATATAATGCTTACCTCACTGATTCTGCAAAGAGATTATGGTATAAAGATGGAAAAGATGCAGTTTTGGTGTTTAACTCCAGCAGCCCTGACAGTGGACTCTTAACAGGAGAAATATTTGGTAAACCTACAGAGAAAAACTGCAGCACTCGCTTCAATAATCTCAAACCAACAGACAATGGATCATATTTCTTCAGACTTGAAGGCAACGGTGGACTGAAATGGAGCTACAGAAACCCTGATTTCTCCCAAGTTGAAATAGTTGTCAGAGcgTCTCCACCCAATCCCACAGTGCTTCTGTTTCAGGATCAGCAGGAGGTGATGGAGGTGACGGAGGGAAAATCAGTGACTCTGAGCTGCTCTATTAAGATCTTTTGTCCATTTCATCCACCATCTCTCACATGGAGCTTCAGTCCTGAACTCCTCATCAATGCAAACATCACAGAACAGCAGCATCAAAGCCAAACACATTACTACTCTGATCTGATGTTCACTGTAACTCATCATCATCACAGAGCTGAATTCACCTGCACTGCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTATGCTCCAAAAAACACATCTGTTCATATATACGGTGCAGCAGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGCGAACTACAGCTGGTACAGACACACTGAAGGAGACCTGGAACCACCGACTGGACCAAACCTGACTATCAGCAACACCAACCGGTCTCACAGTGGACGATACTACTGTTCAGCTGAAAACCAACACGGAGCTCAGAACATATCAGTGCTGCTGGACGTCCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACAACCAAAACATGAGCAAAATAAATTTGACTGGACCAAACCTGACCATCAGCAATGTCAACCCGGCCCACAGAGGACGATACTACTGTAGAGCTGAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTttccACCCAAAATCTCCAGCTCTTGTAGCCAAAACGACACACTCGTCTGCATCTGTAAGGTTGACGGGAATCCTCTGCCTAAACTACAGTGGCGTCTGTCTGGAAATGTTCTCAATTCCACTGAAGAAATGCAGATAAGTGAGCAAACTGTAGGAAACAAGAGCTTGGAGAGCATCCTGAGCATCCGCCAGTCTCTCTCAGACTCATCAGTCCTGCAGTGTTGGACTGCAAACGCTCACGGATCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057516 lncRNA upstream 70027 1865560 ~ 1866450 (+) True XLOC_026985
TCONS_00057515 lncRNA upstream 73965 1857483 ~ 1862512 (+) True XLOC_026984
TCONS_00057514 lncRNA upstream 83823 1845630 ~ 1852654 (+) True XLOC_026983
TCONS_00053252 lncRNA upstream 91321 1843099 ~ 1845156 (+) False XLOC_026982
TCONS_00057110 lncRNA downstream 8762 1950010 ~ 1952722 (+) False XLOC_026987
TCONS_00057519 lncRNA downstream 8830 1950078 ~ 1958820 (+) False XLOC_026987
TCONS_00057520 lncRNA downstream 9582 1950830 ~ 1959986 (+) False XLOC_026987
TCONS_00057521 lncRNA downstream 15809 1957057 ~ 1960605 (+) False XLOC_026987
TCONS_00057522 lncRNA downstream 24191 1965439 ~ 1972711 (+) False XLOC_026987
TCONS_00053249 mRNA upstream 165169 1761029 ~ 1771308 (+) False XLOC_026980
TCONS_00053248 mRNA upstream 176922 1757462 ~ 1759555 (+) True XLOC_026979
TCONS_00053246 mRNA upstream 205557 1722899 ~ 1730920 (+) False XLOC_026977
TCONS_00053244 mRNA upstream 293376 1620102 ~ 1643101 (+) True XLOC_026974
TCONS_00053243 mRNA upstream 296121 1619584 ~ 1640356 (+) False XLOC_026974
TCONS_00053258 mRNA downstream 118444 2059692 ~ 2062435 (+) True XLOC_026989
TCONS_00053259 mRNA downstream 151435 2092683 ~ 2099581 (+) True XLOC_026990
TCONS_00053260 mRNA downstream 287506 2228754 ~ 2250264 (+) False XLOC_026991
TCONS_00053261 mRNA downstream 289453 2230701 ~ 2250254 (+) True XLOC_026991
TCONS_00053262 mRNA downstream 310875 2252123 ~ 2258796 (+) False XLOC_026992
TCONS_00053247 other upstream 210683 1722903 ~ 1725794 (+) True XLOC_026977
TCONS_00053233 other upstream 744833 1191527 ~ 1191644 (+) True XLOC_026966
TCONS_00053221 other upstream 1382093 554267 ~ 554384 (+) True XLOC_026949
TCONS_00053220 other upstream 1516703 419659 ~ 419774 (+) True XLOC_026948
TCONS_00053217 other upstream 1542575 393766 ~ 393902 (+) True XLOC_026945
TCONS_00053255 other downstream 9601 1950849 ~ 1951496 (+) False XLOC_026987
TCONS_00053256 other downstream 16992 1958240 ~ 1974894 (+) False XLOC_026987
TCONS_00053257 other downstream 26508 1967756 ~ 1974208 (+) True XLOC_026987
TCONS_00053267 other downstream 640668 2581916 ~ 2582031 (+) True XLOC_026997
TCONS_00053290 other downstream 2435250 4376498 ~ 4387008 (+) True XLOC_027026

Expression Profile

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