RNA id: TCONS_00053253


Basic Information

Item Value
RNA id TCONS_00053253
length 1075
RNA type processed_transcript
GC content 0.47
exon number 6
gene id XLOC_026986
representative False

Chromosome Information

Item Value
chromosome id NC_007115.7
NCBI id CM002888.2
chromosome length 78093715
location 1936477 ~ 1952999 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATCAGTGACTCTGAGCTGCTCTATTAAGATCTTTTGTCCATTTCATCCACCATCTCTCACATGGAGCTTCAGTCCTGAACTCCTCATCAATGCAAACATCACAGAACAGCAGCATCAAAGCCAAACACATTACTACTCTGATCTGATGTTCACTGTAACTCATCATCATCACAGAGCTGAATTCACCTGCACTGCAACACAGCAGCAGATCACAACACACAGCACCCGACAGCTACATGTTCAGTATGCTCCTAAAAGTGTCTCTGCTCATGTGAGTCCAGCTGGTGTGATTGTGGAGGGTcattcagtgactctgagctgcagcagtgaAGCAAACCCAGCAGTCAAATACAGCTGGTACAGACACACTGAAGAAGACCTGAAACTACTGACTGGACCAAACCTGATCATCAGCAACACAAATATGACCATCAGACACACCAACCTGACAATCAGCAACCAAAACATGAGCAAAATAAATTTGACTGGACCAAACCTGACCATCAGCAATGTCAACCCGGCCCACAGAGGACGATACTACTGTAGAGCTGAAAACCAACACGGGACTCAGAACACATCAGTGCTGCTGGACGTCCAGTttccACCCAAAATCTCCAGCTCTTGTAGCCAAAACGACACACTCGTCTGCATCTGTAAGGTTGACGGGAATCCTCTGCCTAAACTACAGTGGCGTCTGTCTGGAAATGTTCTCAATTCCACTGAAGAAATGCAGATAAGTGAGCAAACTGTAGGAAACAAGAGCTTGGAGAGCATCCTGAGCATCCGCCAGTCTCTCTCAGACTCATCAGTCCTGCAGTGTTGGACTGCAAACGCTCACGGATCCGCCAGCCACCAGTTTCAGCACATCACAACAACACCAGACACAGGTCTCCATCCTGCATGTTTGCTGCTGGGATTTTCTGTAGGAGCATCACTCGTCCTGATCTTCTGTGTTCTGACCGTCTGCAATGAACGAAAAAAGTCTAGAAAACTTTCAGAAAGCAGACAAGACAACGCTTCTGAACTCATTCGGACTGAAAGCAAAACCTTGCTGTCGTCCACATTGATCACGTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000132234

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00057516 lncRNA upstream 71072 1865560 ~ 1866450 (+) True XLOC_026985
TCONS_00057515 lncRNA upstream 75010 1857483 ~ 1862512 (+) True XLOC_026984
TCONS_00057514 lncRNA upstream 84868 1845630 ~ 1852654 (+) True XLOC_026983
TCONS_00057511 lncRNA upstream 92366 1842969 ~ 1845156 (+) False XLOC_026982
TCONS_00053252 lncRNA upstream 92366 1843099 ~ 1845156 (+) False XLOC_026982
TCONS_00057110 lncRNA downstream 6424 1950010 ~ 1952722 (+) False XLOC_026987
TCONS_00057519 lncRNA downstream 6492 1950078 ~ 1958820 (+) False XLOC_026987
TCONS_00057520 lncRNA downstream 7244 1950830 ~ 1959986 (+) False XLOC_026987
TCONS_00057521 lncRNA downstream 13471 1957057 ~ 1960605 (+) False XLOC_026987
TCONS_00057522 lncRNA downstream 21853 1965439 ~ 1972711 (+) False XLOC_026987
TCONS_00053249 mRNA upstream 166214 1761029 ~ 1771308 (+) False XLOC_026980
TCONS_00053248 mRNA upstream 177967 1757462 ~ 1759555 (+) True XLOC_026979
TCONS_00053246 mRNA upstream 206602 1722899 ~ 1730920 (+) False XLOC_026977
TCONS_00053244 mRNA upstream 294421 1620102 ~ 1643101 (+) True XLOC_026974
TCONS_00053243 mRNA upstream 297166 1619584 ~ 1640356 (+) False XLOC_026974
TCONS_00053258 mRNA downstream 116106 2059692 ~ 2062435 (+) True XLOC_026989
TCONS_00053259 mRNA downstream 149097 2092683 ~ 2099581 (+) True XLOC_026990
TCONS_00053260 mRNA downstream 285168 2228754 ~ 2250264 (+) False XLOC_026991
TCONS_00053261 mRNA downstream 287115 2230701 ~ 2250254 (+) True XLOC_026991
TCONS_00053262 mRNA downstream 308537 2252123 ~ 2258796 (+) False XLOC_026992
TCONS_00053247 other upstream 211728 1722903 ~ 1725794 (+) True XLOC_026977
TCONS_00053233 other upstream 745878 1191527 ~ 1191644 (+) True XLOC_026966
TCONS_00053221 other upstream 1383138 554267 ~ 554384 (+) True XLOC_026949
TCONS_00053220 other upstream 1517748 419659 ~ 419774 (+) True XLOC_026948
TCONS_00053216 other upstream 1539598 391376 ~ 397924 (+) True XLOC_026944
TCONS_00053255 other downstream 7263 1950849 ~ 1951496 (+) False XLOC_026987
TCONS_00053256 other downstream 14654 1958240 ~ 1974894 (+) False XLOC_026987
TCONS_00053257 other downstream 24170 1967756 ~ 1974208 (+) True XLOC_026987
TCONS_00053267 other downstream 638330 2581916 ~ 2582031 (+) True XLOC_026997
TCONS_00053290 other downstream 2432912 4376498 ~ 4387008 (+) True XLOC_027026